Detailed information of evm.model.Ap7.2506 in Astrangia poculata

Genomic Location: Ap7:26374955...26394086
NR annotation: XP_020615572.1, ultraviolet-B receptor UVR8-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9FN03Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana OX=3702 GN=UVR8 PE=1 SV=1
O95714E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens OX=9606 GN=HERC2 PE=1 SV=2
Q4U2R1E3 ubiquitin-protein ligase HERC2 OS=Mus musculus OX=10090 GN=Herc2 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004818 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00415
all species →		RCC1Regulator of chromosome condensation (RCC1) repeatRepeatInterproscan
PF01363
all species →		FYVEFYVE zinc fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000408
all species →		RepeatRegulator of chromosome condensation, RCC1Interproscan
IPR009091
all species →		Homologous_superfamilyRegulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIInterproscan
IPR017455
all species →		DomainZinc finger, FYVE-relatedInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR011993
all species →		Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR051210
all species →		FamilyUbiquitin ligases and GEF domain-containing proteinInterproscan
IPR000306
all species →		DomainFYVE zinc fingerInterproscan
IPR011011
all species →		Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22870
all species →		REGULATOR OF CHROMOSOME CONDENSATIONInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap7.2506.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP