Genomic Location: Ap7:26891841...26904083
NR annotation: XP_020617075.1, F-box/LRR-repeat protein 2-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap7.2555 |
| Transcript |
| evm.model.Ap7.2555 |
| Protein |
| evm.model.Ap7.2555 |
| UniProt accession | Description |
|---|---|
| Q9QZH7 | F-box/LRR-repeat protein 20 OS=Rattus norvegicus OX=10116 GN=Fbxl20 PE=1 SV=1 |
| A6H779 | F-box/LRR-repeat protein 2 OS=Bos taurus OX=9913 GN=FBXL2 PE=2 SV=1 |
| Q58DG6 | F-box/LRR-repeat protein 20 OS=Bos taurus OX=9913 GN=FBXL20 PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005925 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12937 all species → | F-box-like | F-box-like | Domain | Interproscan |
| PF13516 all species → | LRR_6 | Leucine Rich repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001810 all species → | Domain | F-box domain | Interproscan |
| IPR001611 all species → | Repeat | Leucine-rich repeat | Interproscan |
| IPR032675 all species → | Homologous_superfamily | Leucine-rich repeat domain superfamily | Interproscan |
| IPR050648 all species → | Family | F-box/Leucine-rich repeat | Interproscan |
| IPR006553 all species → | Repeat | Leucine-rich repeat, cysteine-containing subtype | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13382 all species → | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10268 | FBXL2_20; F-box and leucine-rich repeat protein 2/20 | - | Ubiquitin system | ko04121 | deepkoala |
Transcript abundance of evm.model.Ap7.2555 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
