Gene detail

Detailed information of evm.model.Ap7.2619 in Astrangia poculata

Genomic Location: Ap7:27606218...27614312
NR annotation: XP_020611547.1, speckle targeted PIP5K1A-regulated poly(A) polymerase-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap7.2619

atggcggaccaaggcactgttcgtggaaagcaagtcttttgcgacgtttgtggagtcacgttaccttcagcttctttattgccaacccacaataaagggaaaaagcaccaaagattgttgaacttaaaacaggagagagcaaactcctccaagaggagcatttatgttcggggatttcaaaactctggatccattgaagaagagttgactgaatacttcaatgtttatgggaaggtctcaaatgtattcctggacaaagataagggtgttttcgctatagtggagttcagtaatgaagaaaacgttgccacagtacttactcaggagtcgttaccacttttaaatggaaaacgactaacagtaaaagaaagaactgttaataaagcagctcttcagtttaacacacataaatcaagaaagcgcaaacatgatgactcacaacaaaaccaagatccacacttggaaaccaaagagatggctccatttttgtctaaagatctcattgtcaaactgaagtcatctcttacagtagaagaacaagtcaacttgttgatgcaacacttgtgtctaactgatgaggacattaagttgagaagactggtttgtcaactgttacaggaagtgttcagtgaagtctatccaggttcgtcagtggtgccatttggttctactgtaagtggagttggctggaaaggaagcgacttggatgtttgtttactgacaaatgaatgtgttgtaccgccgcagtctaatgacactggtgtcgattactctttagttattgacatgttacgcagtttcgcacctggctgtacaaacatcataccagtcctgactgctaaatgtcctcttatcaagttcacgcaccagccttcaggcctgtcatgtgacctatctgtgaataataggcttggtgtggcaaactcagatctccttcgctgctacatgtcgcttgatcccaggatccctcagctggtgtttattgtgagagcctgggcaaaagccaaggccgtcaccattggtcgacagctgtcaaactacgcactgaccctgatggtgttatacttcctgcagatgcaaaatccttctgttgttccctcgttacagcagggatttgaatcgtggatcaaacaacagtcagattcatgtgacaccaaagatcacggctgccgtgagcagcatgctgtggagcttgaatccaagatgattgataattggaactgttcattctttgctgatattgccagacttactccgtcacagaataccaaaagtctgagtcagttactggaggaattctttttcttcttttccactgaatttgactttgccaattgtgtggtcagcatacgacatagtcaaaagacaagtatcacatcagtgttagatgagttaaagggtgtgagatattcagaaatggaaaaagacacgaactgcgtcacattcaaggatgaaccaacatgtgaaaaacaatcaacaaagactggctgtaaggctgctggtgaagttatttcgtcaacagaaaaaatcactgaacagcagagagccataccaaagtctggtactgccagttctcaaaacattccaggaagcagcaagctcactgagtttaaggtgtccccattgtgtgttcaggacccatttgaacttgtacacaacttaacgcagaatattactgtacgaacactgaaacatatcattgaattaatgaagactgctcataggatttgtaaggatctgaatggctgcagtgacaacccaaacaatgatgcaagcaaatttcttgacctgttcacagtttgtagatctaccaagaaaagaaagatttcacactgccatagtttctttgtggagtatcaagaaattagtcctcaagcatcttgcagcgacatgctggagtccagtgtcatcctggacacgcccaggggaatttttctgcttattgtagagacgttagaaagagaatttggatttaagtgtgaaataaagtccttagcaaaaagactatgcaacagtggaaaggattgtgacttgccacagggtggccaaccagccaagatgtcacaggaatcccactgtgttgtggagacctccacagaaaattgtgataatactggaaataactctgatgctagaaagggggaggatcaaacaaaatcagaggaagttgaggacaacttttcagccatttgcacagcctttgagaacacatggacacattgccggagagaacggcgaaagtcactacagcctcagaagctacaaagaaatgaaaatagtgaaagtgctggaaaacaggtgtcagcggaagagaaggctgagcaaaaacattcagggaaatctgaggaatccaaattccagatgtcttcaccttgtaagaaccctgagaaatttgttaatgtccataatgttggttccccgattcttatttttgaactgagtgtcaacagttcaacccagaaggacttgaaacatggttgtactgtctcgatggaacctgccgaaagtaaagacttccagctatttgggaacttcttcacagcttataagaaatacttcatgggtttgttaacaaagtaa

Transcript

evm.model.Ap7.2619

ATGGCGGACCAAGGCACTGTTCGTGGAAAGCAAGTCTTTTGCGACGTTTGTGGAGTCACGTTACCTTCAGCTTCTTTATTGCCAACCCACAATAAAGGGAAAAAGCACCAAAGATTGTTGAACTTAAAACAGGAGAGAGCAAACTCCTCCAAGAGGAGCATTTATGTTCGGGGATTTCAAAACTCTGGATCCATTGAAGAAGAGTTGACTGAATACTTCAATGTTTATGGGAAGGTCTCAAATGTATTCCTGGACAAAGATAAGGGTGTTTTCGCTATAGTGGAGTTCAGTAATGAAGAAAACGTTGCCACAGTACTTACTCAGGAGTCGTTACCACTTTTAAATGGAAAACGACTAACAGTAAAAGAAAGAACTGTTAATAAAGCAGCTCTTCAGTTTAACACACATAAATCAAGAAAGCGCAAACATGATGACTCACAACAAAACCAAGATCCACACTTGGAAACCAAAGAGATGGCTCCATTTTTGTCTAAAGATCTCATTGTCAAACTGAAGTCATCTCTTACAGTAGAAGAACAAGTCAACTTGTTGATGCAACACTTGTGTCTAACTGATGAGGACATTAAGTTGAGAAGACTGGTTTGTCAACTGTTACAGGAAGTGTTCAGTGAAGTCTATCCAGGTTCGTCAGTGGTGCCATTTGGTTCTACTGTAAGTGGAGTTGGCTGGAAAGGAAGCGACTTGGATGTTTGTTTACTGACAAATGAATGTGTTGTACCGCCGCAGTCTAATGACACTGGTGTCGATTACTCTTTAGTTATTGACATGTTACGCAGTTTCGCACCTGGCTGTACAAACATCATACCAGTCCTGACTGCTAAATGTCCTCTTATCAAGTTCACGCACCAGCCTTCAGGCCTGTCATGTGACCTATCTGTGAATAATAGGCTTGGTGTGGCAAACTCAGATCTCCTTCGCTGCTACATGTCGCTTGATCCCAGGATCCCTCAGCTGGTGTTTATTGTGAGAGCCTGGGCAAAAGCCAAGGCCGTCACCATTGGTCGACAGCTGTCAAACTACGCACTGACCCTGATGGTGTTATACTTCCTGCAGATGCAAAATCCTTCTGTTGTTCCCTCGTTACAGCAGGGATTTGAATCGTGGATCAAACAACAGTCAGATTCATGTGACACCAAAGATCACGGCTGCCGTGAGCAGCATGCTGTGGAGCTTGAATCCAAGATGATTGATAATTGGAACTGTTCATTCTTTGCTGATATTGCCAGACTTACTCCGTCACAGAATACCAAAAGTCTGAGTCAGTTACTGGAGGAATTCTTTTTCTTCTTTTCCACTGAATTTGACTTTGCCAATTGTGTGGTCAGCATACGACATAGTCAAAAGACAAGTATCACATCAGTGTTAGATGAGTTAAAGGGTGTGAGATATTCAGAAATGGAAAAAGACACGAACTGCGTCACATTCAAGGATGAACCAACATGTGAAAAACAATCAACAAAGACTGGCTGTAAGGCTGCTGGTGAAGTTATTTCGTCAACAGAAAAAATCACTGAACAGCAGAGAGCCATACCAAAGTCTGGTACTGCCAGTTCTCAAAACATTCCAGGAAGCAGCAAGCTCACTGAGTTTAAGGTGTCCCCATTGTGTGTTCAGGACCCATTTGAACTTGTACACAACTTAACGCAGAATATTACTGTACGAACACTGAAACATATCATTGAATTAATGAAGACTGCTCATAGGATTTGTAAGGATCTGAATGGCTGCAGTGACAACCCAAACAATGATGCAAGCAAATTTCTTGACCTGTTCACAGTTTGTAGATCTACCAAGAAAAGAAAGATTTCACACTGCCATAGTTTCTTTGTGGAGTATCAAGAAATTAGTCCTCAAGCATCTTGCAGCGACATGCTGGAGTCCAGTGTCATCCTGGACACGCCCAGGGGAATTTTTCTGCTTATTGTAGAGACGTTAGAAAGAGAATTTGGATTTAAGTGTGAAATAAAGTCCTTAGCAAAAAGACTATGCAACAGTGGAAAGGATTGTGACTTGCCACAGGGTGGCCAACCAGCCAAGATGTCACAGGAATCCCACTGTGTTGTGGAGACCTCCACAGAAAATTGTGATAATACTGGAAATAACTCTGATGCTAGAAAGGGGGAGGATCAAACAAAATCAGAGGAAGTTGAGGACAACTTTTCAGCCATTTGCACAGCCTTTGAGAACACATGGACACATTGCCGGAGAGAACGGCGAAAGTCACTACAGCCTCAGAAGCTACAAAGAAATGAAAATAGTGAAAGTGCTGGAAAACAGGTGTCAGCGGAAGAGAAGGCTGAGCAAAAACATTCAGGGAAATCTGAGGAATCCAAATTCCAGATGTCTTCACCTTGTAAGAACCCTGAGAAATTTGTTAATGTCCATAATGTTGGTTCCCCGATTCTTATTTTTGAACTGAGTGTCAACAGTTCAACCCAGAAGGACTTGAAACATGGTTGTACTGTCTCGATGGAACCTGCCGAAAGTAAAGACTTCCAGCTATTTGGGAACTTCTTCACAGCTTATAAGAAATACTTCATGGGTTTGTTAACAAAGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4KMD7	Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Danio rerio OX=7955 GN=tut1 PE=2 SV=1
A9JTS5	Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Xenopus tropicalis OX=8364 GN=tut1 PE=2 SV=1
Q9D0D3	Poly(A) RNA polymerase, mitochondrial OS=Mus musculus OX=10090 GN=Mtpap PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004687 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03828 all species →	PAP_assoc	Cid1 family poly A polymerase	Family	Interproscan
PF01909 all species →	NTP_transf_2	Nucleotidyltransferase domain	Domain	Interproscan
PF12874 all species →	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan
PF17797 all species →	RL	RL domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002058 all species →	Domain	PAP/25A-associated	Interproscan
IPR002934 all species →	Domain	Polymerase, nucleotidyl transferase domain	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR043519 all species →	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR041252 all species →	Domain	RL domain	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12271 all species →	POLY A POLYMERASE CID PAP -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016779 all species →	Molecular Function	nucleotidyltransferase activity	Interproscan
GO:0006378 all species →	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0031123 all species →	Biological Process	RNA 3'-end processing	Interproscan
GO:1990817 all species →	Molecular Function	poly(A) RNA polymerase activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18709	TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase	EC:2.7.7.19 EC:2.7.7.52	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.