Detailed information of evm.model.Ap7.2644 in Astrangia poculata

Genomic Location: Ap7:27808262...27838077
NR annotation: XP_027038203.1, uncharacterized protein LOC113666615 [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7TN88Polycystin-1-like protein 2 OS=Mus musculus OX=10090 GN=Pkd1l2 PE=2 SV=1
Q7Z442Polycystin-1-like protein 2 OS=Homo sapiens OX=9606 GN=PKD1L2 PE=1 SV=5
O08852Polycystin-1 OS=Mus musculus OX=10090 GN=Pkd1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000040 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01822
all species →
WSCWSC domainDomainInterproscan
PF00801
all species →
PKDPKD domainDomainInterproscan
PF01825
all species →
GPSGPCR proteolysis site, GPS, motif MotifInterproscan
PF02010
all species →
REJREJ domainFamilyInterproscan
PF01477
all species →
PLATPLAT/LH2 domainDomainInterproscan
PF20519
all species →
Polycystin_domPolycystin domainDomainInterproscan
PF08016
all species →
PKD_channelPolycystin cation channelFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002889
all species →
DomainCarbohydrate-binding WSCInterproscan
IPR000601
all species →
DomainPKD domainInterproscan
IPR022409
all species →
DomainPKD/Chitinase domainInterproscan
IPR035986
all species →
Homologous_superfamilyPKD domain superfamilyInterproscan
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR042060
all species →
DomainPolycystin-1 like, PLAT/LH2 domainInterproscan
IPR014010
all species →
DomainREJ domainInterproscan
IPR001024
all species →
DomainPLAT/LH2 domainInterproscan
IPR000203
all species →
Conserved_siteGPS motifInterproscan
IPR002859
all species →
DomainPKD/REJ-like domainInterproscan
IPR000434
all species →
FamilyPolycystic kidney disease type 1 proteinInterproscan
IPR046791
all species →
DomainPolycystin domainInterproscan
IPR013122
all species →
DomainPolycystin cation channel, PKD1/PKD2Interproscan
IPR036392
all species →
Homologous_superfamilyPLAT/LH2 domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46730
all species →
POLYCYSTIN-1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0005261
all species →
Molecular Functionmonoatomic cation channel activityInterproscan
GO:0005886
all species →
Cellular Componentplasma membraneInterproscan
GO:0006816
all species →
Biological Processcalcium ion transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K04988PKD1L2; polycystin 1L2-Ion channelsko04040deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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