Gene detail

Detailed information of evm.model.Ap7.2669 in Astrangia poculata

Genomic Location: Ap7:28086739...28124549
NR annotation: CAH3127166.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap7.2669

atggcacatgcaaaagatgtggaggtagaacctcctatgcatcttcaacggccgtcgtctggtcgctcacaagatgtgtcgcatctgctcgcaagtgtgtttcgggaggtttttactcgtgatgttatcggagaggacaccgtgaaaaacctcgctgtttcaaaaagcggcgacgctggctaccatgataaatatgtggagcaattaagaaagatacaagaggagcgcgatcgtcggcacagagaggcagatatgttagaagctcatataatgcaggctcaagctgcggctatggcagctgatgagagggaactccagagaatatctgaaggatatgaaaattaccaagcactgggcttaccaccagcaaaatcaagcctcagaaactgtctagatactcagttacttcgacgttacaaccttattgttccagaggatttctcttcagaagaagcgtctcaaacaaaagcacccaaagctgatgaaataccaagttatgccagacccaccacgtcatctcaacagcgatacagaaaaaccccaccattaacagactatttggatgatactgccctgtcgacatcaacgtggccatgggcatcacttccacctacccaggcaaaagagaagagggatttagacatgtctccaccaccaagtgccaaaagcaggctctcaaaatcttcagcgtggagagaatctatgaaacctgatcagcgacaagtggagcgggaagatcttaaaaggttacagagcaaagcagagtacaagaggaaccctcgattcgtgcctcccctcaaaggaggcctcacgaaaccacacaaggagaaaaagaaaaagaaactcgagactgacaaagaaagcaaaactactgatcctgttgaagtattcattgcgtcaccatctccagttgtgtttacagcttatgaagttgggcaagtgtatgagttacttctggaactcaagaatgtttcatcgtcaagtcgccaactgaggataactccaccaagtacaaaatacttctctgttgggctagggagatttcctggagagcatggcgtggtagcacctggtctatgttgtcagtatccaatcaaattcgctcctgattctcttgcagactatgacgatttcatcaaggtaaaaacccaggcagaccctccaatgattatcgctattcaaggcagaaggcctcctcctgtgctctctttgtctccagtacttgactgtggtcacactctggtgggaggccagaaagttgttcagatggtttgtgaaaacaaaggaggagatggcaagttttgcatcatgaggaaatcttgttggccttcaaccacctttgagtggaatcttgaggatcctggatcagtttctgcggaaccatttgaactaaaaccagccatgttcaaattggatgctggacaagtcattacgttggagactacgttttgtcctacatcagcaaagtacttcaaagaggaggtggtctttgtttgcgataattgtcatgtaaaggagttttcacttgaaggcacaggtcaaatggcgggggtagagcttgattctgtatcaggaggacttagcgaatcagagctcggggagatgagggatatttcagcacaacattttataagattcgatgaacagaaccctgaaacaactacagaaaagacactggttattaaaaacactacaaatgttgctctacctttccgctggaaactttacaagccattcttcaagtgccctgtccctcctggggtccctacgcaaccgtcgatgacgtcattgcacgtggcacggactagggatgatcacggagtgttcatgatcacgccaaatatgggcattttgccgcctaatcaatccgtggacttcatgctggaattcgcaccaagagaggttggtagttttcacgctgttggacatttgatcctggaggagattccaaatcatgaggacaacaattccaccgcaaatgatgttagagatgtgacggctgtgcaaattgaaatgaaagctgttagcaagccgtttgatgtgtctgtctcccctccactggttgtgtgccctgggacactcacaataggtgtccagtacaggtttcctctaaagatgtccaacaacagcgtctctgaagcaagtgttgcgtggagaaacgtggaaggaacatcttggagagtttcagtggaaccacaatcatctgttatcggtgcgggtcaggaagtcaatttggagttagttatggtggctgatgaaccagtccatatcgaggagacgatcttttgtgacttgaaacactcctcggctccggtgtatgtctatgtcaaggccaactttaaaggaccagaggttgttttcacatctccagacctgaatttcaatcttgttcgctacaaagaactacatggctataagcatatcactatccaaaacatatcaagtatttcagctgagtggagcatccaggaatcttctgagtgtctagagcagtccgcagatggcgacaaggccatctctgtattctcctttaatcccgccggcggagtcctgggtccacaagagagccaggatatcgaagtattgtttaaaccatgtgaggcaggcattgagggccgagtgaggactgtgttacagtgtgacgtcaagaatggaaaatcaagctatttatcagtatttgctgaagtacaaagacctcaagtttgtctgttgtcgtgtgacatgtacatcgagaaggtctatttaggtgtccctgtcagcagagaagttgtgctccataatcagtcactgctgcgagcaaagtttgcgtggaaagaagtccttgaaggagactacactttaactttcgaacctaaagatggatggttgaagccaagagaggagctgtccatcaaacttacatttacgggacataaaaagggccctgtaagcgatctgatcacgtgctgtgaggtggtgcggatgccagaccctctgtggctgtcaatcgcagctgacgtgcagggactgagtgttacgttcgagactccgaaattctttgatcttgacagacctgaagaaatcaaggaaacttcccttgacgaccgggagttgctgctagattttgaagcagtaccgctggccagttgtcctcgcacgacccttgttctcaccaatacttcagccataagagcacggtttagtttagagatggatcattttaaagcagctaaaccgccaactccacctgacggtgctccgcagagcaaaaggacacgacttctgggaaggactccaaacattgccgatccaatcagcaagacggctattaaagctcacgcagattactgtcaagccatcttgcgtgacagaagaggagcagcatttgtgccaaatccagcgtcgggtgaattgttaccattcggttaccaagtgatagaaatcactggccacagtgacatgtggggcgagtacagagacttgcttgtctgtaagattgaaggtattgatcctgtgtacattcctgtcaaaatggatgttgtaggctgtccgctgaatttccagatgacgaaagaccagtcaccaattcttcggtttggaacgcatgtatctggggctccttcagtccaaagatcactcagaatcaacaacacgagtccatatgacatacgcctggactgggagacatacaacatcgtaccacaggacacccaactcctggacatgttggtattcattggacagccgctaccagtgataaaggacggccaggaagttgtaccagctgtccaggaacaggactgttatccatgcgaggagaaaccatttatacaagttaaactgagggagcacgaaggagcacgtgcaaacaaaccatttgaagtcacgcctagtcagcaggtgattcctgcaaaggctcattcgtctgccaaggtatcgttctttccttacacggaaaacgcgtctggagaagtatgcatggcttacgctgccgcttacatgagtttagatcagcagctccttgaagtacctggacgcgtgagccgatcacacggagtggagttacaacctttccgcttggacataacagctaacatcgatcctgccttactttccctcgaaacagaagaagataaaggaactgaattcattacagcagcgtctgatttgttgcatggggtgacaccgctggtccatcggtttgtgctgggaaacactacagaaacaccgctgaccatgaagtttgaagcgaaggcaccttttaagatcatctccaccgagccacctccatcagccaagacatctaaaacccaaacccccggcagcatcacggtcaaacccgctaaaacgttagagttaaaggttgggttttcattgtctgacgagcttgttcgtaaagtgaacgacatcactgcagcacaggaacaaggcgatggaacggttctcatttcctcagaagacggcgacagaaaacttgtcttccaacgagaccttaaagttgaattttcgaacaaaactacacagttgattcctctgatggcctctatagcggtaccaaccctccgtctgtctcaagatgttgtggactttggcacgtgcctggtcggtcagtcagttgaaaagcacgtgactctgtataatccttcccagtctgcctctgcctgggtcgtcaaaaaagatccacgctatccttccgtcagtcgggacgttttcgtcgtcaatccgaccgaaggatatctcgaggcgaacacgagttttacagcaaagacgaagactctccttaaaattaccttcacagccaagcacaatgttgagtacgagtgtgttgtgatagtcagcggtcaactgcaagaagaggagcagcgactggtactaagagggcgagcatcgtatgatcagagacacgagcggctggtaaatgttaccacagacacgtga

Transcript

evm.model.Ap7.2669

ATGGCACATGCAAAAGATGTGGAGGTAGAACCTCCTATGCATCTTCAACGGCCGTCGTCTGGTCGCTCACAAGATGTGTCGCATCTGCTCGCAAGTGTGTTTCGGGAGGTTTTTACTCGTGATGTTATCGGAGAGGACACCGTGAAAAACCTCGCTGTTTCAAAAAGCGGCGACGCTGGCTACCATGATAAATATGTGGAGCAATTAAGAAAGATACAAGAGGAGCGCGATCGTCGGCACAGAGAGGCAGATATGTTAGAAGCTCATATAATGCAGGCTCAAGCTGCGGCTATGGCAGCTGATGAGAGGGAACTCCAGAGAATATCTGAAGGATATGAAAATTACCAAGCACTGGGCTTACCACCAGCAAAATCAAGCCTCAGAAACTGTCTAGATACTCAGTTACTTCGACGTTACAACCTTATTGTTCCAGAGGATTTCTCTTCAGAAGAAGCGTCTCAAACAAAAGCACCCAAAGCTGATGAAATACCAAGTTATGCCAGACCCACCACGTCATCTCAACAGCGATACAGAAAAACCCCACCATTAACAGACTATTTGGATGATACTGCCCTGTCGACATCAACGTGGCCATGGGCATCACTTCCACCTACCCAGGCAAAAGAGAAGAGGGATTTAGACATGTCTCCACCACCAAGTGCCAAAAGCAGGCTCTCAAAATCTTCAGCGTGGAGAGAATCTATGAAACCTGATCAGCGACAAGTGGAGCGGGAAGATCTTAAAAGGTTACAGAGCAAAGCAGAGTACAAGAGGAACCCTCGATTCGTGCCTCCCCTCAAAGGAGGCCTCACGAAACCACACAAGGAGAAAAAGAAAAAGAAACTCGAGACTGACAAAGAAAGCAAAACTACTGATCCTGTTGAAGTATTCATTGCGTCACCATCTCCAGTTGTGTTTACAGCTTATGAAGTTGGGCAAGTGTATGAGTTACTTCTGGAACTCAAGAATGTTTCATCGTCAAGTCGCCAACTGAGGATAACTCCACCAAGTACAAAATACTTCTCTGTTGGGCTAGGGAGATTTCCTGGAGAGCATGGCGTGGTAGCACCTGGTCTATGTTGTCAGTATCCAATCAAATTCGCTCCTGATTCTCTTGCAGACTATGACGATTTCATCAAGGTAAAAACCCAGGCAGACCCTCCAATGATTATCGCTATTCAAGGCAGAAGGCCTCCTCCTGTGCTCTCTTTGTCTCCAGTACTTGACTGTGGTCACACTCTGGTGGGAGGCCAGAAAGTTGTTCAGATGGTTTGTGAAAACAAAGGAGGAGATGGCAAGTTTTGCATCATGAGGAAATCTTGTTGGCCTTCAACCACCTTTGAGTGGAATCTTGAGGATCCTGGATCAGTTTCTGCGGAACCATTTGAACTAAAACCAGCCATGTTCAAATTGGATGCTGGACAAGTCATTACGTTGGAGACTACGTTTTGTCCTACATCAGCAAAGTACTTCAAAGAGGAGGTGGTCTTTGTTTGCGATAATTGTCATGTAAAGGAGTTTTCACTTGAAGGCACAGGTCAAATGGCGGGGGTAGAGCTTGATTCTGTATCAGGAGGACTTAGCGAATCAGAGCTCGGGGAGATGAGGGATATTTCAGCACAACATTTTATAAGATTCGATGAACAGAACCCTGAAACAACTACAGAAAAGACACTGGTTATTAAAAACACTACAAATGTTGCTCTACCTTTCCGCTGGAAACTTTACAAGCCATTCTTCAAGTGCCCTGTCCCTCCTGGGGTCCCTACGCAACCGTCGATGACGTCATTGCACGTGGCACGGACTAGGGATGATCACGGAGTGTTCATGATCACGCCAAATATGGGCATTTTGCCGCCTAATCAATCCGTGGACTTCATGCTGGAATTCGCACCAAGAGAGGTTGGTAGTTTTCACGCTGTTGGACATTTGATCCTGGAGGAGATTCCAAATCATGAGGACAACAATTCCACCGCAAATGATGTTAGAGATGTGACGGCTGTGCAAATTGAAATGAAAGCTGTTAGCAAGCCGTTTGATGTGTCTGTCTCCCCTCCACTGGTTGTGTGCCCTGGGACACTCACAATAGGTGTCCAGTACAGGTTTCCTCTAAAGATGTCCAACAACAGCGTCTCTGAAGCAAGTGTTGCGTGGAGAAACGTGGAAGGAACATCTTGGAGAGTTTCAGTGGAACCACAATCATCTGTTATCGGTGCGGGTCAGGAAGTCAATTTGGAGTTAGTTATGGTGGCTGATGAACCAGTCCATATCGAGGAGACGATCTTTTGTGACTTGAAACACTCCTCGGCTCCGGTGTATGTCTATGTCAAGGCCAACTTTAAAGGACCAGAGGTTGTTTTCACATCTCCAGACCTGAATTTCAATCTTGTTCGCTACAAAGAACTACATGGCTATAAGCATATCACTATCCAAAACATATCAAGTATTTCAGCTGAGTGGAGCATCCAGGAATCTTCTGAGTGTCTAGAGCAGTCCGCAGATGGCGACAAGGCCATCTCTGTATTCTCCTTTAATCCCGCCGGCGGAGTCCTGGGTCCACAAGAGAGCCAGGATATCGAAGTATTGTTTAAACCATGTGAGGCAGGCATTGAGGGCCGAGTGAGGACTGTGTTACAGTGTGACGTCAAGAATGGAAAATCAAGCTATTTATCAGTATTTGCTGAAGTACAAAGACCTCAAGTTTGTCTGTTGTCGTGTGACATGTACATCGAGAAGGTCTATTTAGGTGTCCCTGTCAGCAGAGAAGTTGTGCTCCATAATCAGTCACTGCTGCGAGCAAAGTTTGCGTGGAAAGAAGTCCTTGAAGGAGACTACACTTTAACTTTCGAACCTAAAGATGGATGGTTGAAGCCAAGAGAGGAGCTGTCCATCAAACTTACATTTACGGGACATAAAAAGGGCCCTGTAAGCGATCTGATCACGTGCTGTGAGGTGGTGCGGATGCCAGACCCTCTGTGGCTGTCAATCGCAGCTGACGTGCAGGGACTGAGTGTTACGTTCGAGACTCCGAAATTCTTTGATCTTGACAGACCTGAAGAAATCAAGGAAACTTCCCTTGACGACCGGGAGTTGCTGCTAGATTTTGAAGCAGTACCGCTGGCCAGTTGTCCTCGCACGACCCTTGTTCTCACCAATACTTCAGCCATAAGAGCACGGTTTAGTTTAGAGATGGATCATTTTAAAGCAGCTAAACCGCCAACTCCACCTGACGGTGCTCCGCAGAGCAAAAGGACACGACTTCTGGGAAGGACTCCAAACATTGCCGATCCAATCAGCAAGACGGCTATTAAAGCTCACGCAGATTACTGTCAAGCCATCTTGCGTGACAGAAGAGGAGCAGCATTTGTGCCAAATCCAGCGTCGGGTGAATTGTTACCATTCGGTTACCAAGTGATAGAAATCACTGGCCACAGTGACATGTGGGGCGAGTACAGAGACTTGCTTGTCTGTAAGATTGAAGGTATTGATCCTGTGTACATTCCTGTCAAAATGGATGTTGTAGGCTGTCCGCTGAATTTCCAGATGACGAAAGACCAGTCACCAATTCTTCGGTTTGGAACGCATGTATCTGGGGCTCCTTCAGTCCAAAGATCACTCAGAATCAACAACACGAGTCCATATGACATACGCCTGGACTGGGAGACATACAACATCGTACCACAGGACACCCAACTCCTGGACATGTTGGTATTCATTGGACAGCCGCTACCAGTGATAAAGGACGGCCAGGAAGTTGTACCAGCTGTCCAGGAACAGGACTGTTATCCATGCGAGGAGAAACCATTTATACAAGTTAAACTGAGGGAGCACGAAGGAGCACGTGCAAACAAACCATTTGAAGTCACGCCTAGTCAGCAGGTGATTCCTGCAAAGGCTCATTCGTCTGCCAAGGTATCGTTCTTTCCTTACACGGAAAACGCGTCTGGAGAAGTATGCATGGCTTACGCTGCCGCTTACATGAGTTTAGATCAGCAGCTCCTTGAAGTACCTGGACGCGTGAGCCGATCACACGGAGTGGAGTTACAACCTTTCCGCTTGGACATAACAGCTAACATCGATCCTGCCTTACTTTCCCTCGAAACAGAAGAAGATAAAGGAACTGAATTCATTACAGCAGCGTCTGATTTGTTGCATGGGGTGACACCGCTGGTCCATCGGTTTGTGCTGGGAAACACTACAGAAACACCGCTGACCATGAAGTTTGAAGCGAAGGCACCTTTTAAGATCATCTCCACCGAGCCACCTCCATCAGCCAAGACATCTAAAACCCAAACCCCCGGCAGCATCACGGTCAAACCCGCTAAAACGTTAGAGTTAAAGGTTGGGTTTTCATTGTCTGACGAGCTTGTTCGTAAAGTGAACGACATCACTGCAGCACAGGAACAAGGCGATGGAACGGTTCTCATTTCCTCAGAAGACGGCGACAGAAAACTTGTCTTCCAACGAGACCTTAAAGTTGAATTTTCGAACAAAACTACACAGTTGATTCCTCTGATGGCCTCTATAGCGGTACCAACCCTCCGTCTGTCTCAAGATGTTGTGGACTTTGGCACGTGCCTGGTCGGTCAGTCAGTTGAAAAGCACGTGACTCTGTATAATCCTTCCCAGTCTGCCTCTGCCTGGGTCGTCAAAAAAGATCCACGCTATCCTTCCGTCAGTCGGGACGTTTTCGTCGTCAATCCGACCGAAGGATATCTCGAGGCGAACACGAGTTTTACAGCAAAGACGAAGACTCTCCTTAAAATTACCTTCACAGCCAAGCACAATGTTGAGTACGAGTGTGTTGTGATAGTCAGCGGTCAACTGCAAGAAGAGGAGCAGCGACTGGTACTAAGAGGGCGAGCATCGTATGATCAGAGACACGAGCGGCTGGTAAATGTTACCACAGACACGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y238	Deleted in lung and esophageal cancer protein 1 OS=Homo sapiens OX=9606 GN=DLEC1 PE=1 SV=2
Q8BLA1	Deleted in lung and esophageal cancer protein 1 homolog OS=Mus musculus OX=10090 GN=Dlec1 PE=1 SV=1
Q68FQ8	Deleted in lung and esophageal cancer protein 1 homolog OS=Rattus norvegicus OX=10116 GN=Dlec1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002769 (this species only)

Pfam domain

No Pfam domain signature was detected for evm.model.Ap7.2669. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR033304 all species →	Family	Deleted in lung and esophageal cancer protein 1	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46348 all species →	DELETED IN LUNG AND ESOPHAGEAL CANCER PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0008285 all species →	Biological Process	negative regulation of cell population proliferation	Interproscan
GO:0015631 all species →	Molecular Function	tubulin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25548	DLEC1; deleted in lung and esophageal cancer protein 1	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.