Gene detail

Detailed information of evm.model.Ap7.2690 in Astrangia poculata

Genomic Location: Ap7:28356838...28370634
NR annotation: XP_027038230.1, ATP-dependent zinc metalloprotease FTSH 4, mitochondrial-like [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap7.2690

tacgctttaaaaaagctacagtctgttcagaacgccgcagctcaacttatcactcgttcccgaaaatacaaccacatcactccaatactgaaagaactgcactggcttcctgtttctgaacgcattaaattcaagattctgctacttaccttcaaagctctccatcaacaatctcctatctacattcaagatttgctaacgtactaccaaccttcaagaaccctccgatcatcacactcttcacgtctcaaccctgtcaaattccacctcaagtcgtatgggtctcgagctttttctgtttcctcgcctgaactttggaacattcatattcaaagaagaggtgtacactcagtttctgtccggcgaatacaacaattggaggaaagagcaaatgcagaagagcacaatcccagagcacaggcagagtatttacgggcattagttcaggaggacccaagctatgtcgttaagagatatgaaagcaggaaatatgccatagatgagtctgtcacaaatgaatacttgaaggcattggtgttgactgacagagttaacggtgttgacattaaaaagatcttatcatcatcaagtgaacctggcagtccatcgtcttatggtacagcagcctctcctgccattcagcctggaagtgaagaaaatcctatgtatgttattacacaaaaccagaaaggtgcatttttcaaggaacaactttggaacacgttcagatttctgattgctttgtttctaatcctctccctgattgaagctcaacttcaaatgaagacatgcactgtcaaacaaattaaaacagaattagtgctggattatgatttaaaaatgagtaaccagaaggttccatccccacaaaagggtggacagaaatgtaggattttgatgttcaaggtggaagaggcaaaacaagagttaaaggatgttgttgagttcctgagaaacccagagagatttaaaaggcttggcggaaaaatgcaaactggagtgcttctaattggctcaccaggaacaggcaagactcttctagccaaggctgtcgcaggcgaggccggagtaccattctttttctgctctggttcagagtttgacgaaatgtttgttggagtcggagctgcacgagtcagaaatctcttttctaaaatgtggatttttcttaaatcaaatccttcttgtaacaacaaggccccagtcactgagtcctcctctgacatgatgagcattgtgaagcaagagatcaccatgacaacatacaatgtagctacagcttttactctagctactgcagctagagaacatgctccttgcattgtgttcattgacgagctggatgctattggaggtaccagaattgttcacgatcatcagccctactcgagaatgaccctaaatcagttacttgttgaactggatggatttgacaaatcagaaggaatcgttgtgattggagcaacaaacttccctgaagtgcttgacaaggcgcttgtcagacctggtagatttgacaccaagataactgtacccatgcctgatgtcaaaggtcgtcacgacatcctcaagctacatctgaagaatgtacaagttgctgacgatgtcaagatagaacagcttgccagaggaactgttggcttctcaggtgcggacctagctaacatggtaaatgctgcagcaatttacgctgcaagtgaaggcgacacaaatgttacaaccaagcatcttgaatttgcaaaagacaaaattatcatgggccctgaacgaaagagtgcagtcattgaggccaagaacagggaattggtggcatatcatgagggtggacatgcactggtggccctgtacactccagaagctttgccgatacacaaagcaaccattgtaccacgtggccaggcgttgggaatggtttcccagttgcctgaaaaagacgagttaaactggtctaaagcccagctgctagcaaggcttgatgtagcaatgggcggccgagtagcagaagagcttatcttcggcaaagaaaacataacaatgggagctgcaagtgatatggaatcttcaaataccatcgcacgcgccatggtgtctatgtacggcatgagtgacaaggttggaatggtccaagtgaaggatgttgagaaatcgagccctgagctacaggcgctgattgaaagcgaagtcaagcaacttcttaaggattcatacgagagagccaagactatactccagacgcattccaaggaacataaccgtttagcggaagctctgttgaaatacgagactcttgacttacaagaaatcaagcaggttatccaaggaaaacagctctctagaagtctgtga

Transcript

evm.model.Ap7.2690

TACGCTTTAAAAAAGCTACAGTCTGTTCAGAACGCCGCAGCTCAACTTATCACTCGTTCCCGAAAATACAACCACATCACTCCAATACTGAAAGAACTGCACTGGCTTCCTGTTTCTGAACGCATTAAATTCAAGATTCTGCTACTTACCTTCAAAGCTCTCCATCAACAATCTCCTATCTACATTCAAGATTTGCTAACGTACTACCAACCTTCAAGAACCCTCCGATCATCACACTCTTCACGTCTCAACCCTGTCAAATTCCACCTCAAGTCGTATGGGTCTCGAGCTTTTTCTGTTTCCTCGCCTGAACTTTGGAACATTCATATTCAAAGAAGAGGTGTACACTCAGTTTCTGTCCGGCGAATACAACAATTGGAGGAAAGAGCAAATGCAGAAGAGCACAATCCCAGAGCACAGGCAGAGTATTTACGGGCATTAGTTCAGGAGGACCCAAGCTATGTCGTTAAGAGATATGAAAGCAGGAAATATGCCATAGATGAGTCTGTCACAAATGAATACTTGAAGGCATTGGTGTTGACTGACAGAGTTAACGGTGTTGACATTAAAAAGATCTTATCATCATCAAGTGAACCTGGCAGTCCATCGTCTTATGGTACAGCAGCCTCTCCTGCCATTCAGCCTGGAAGTGAAGAAAATCCTATGTATGTTATTACACAAAACCAGAAAGGTGCATTTTTCAAGGAACAACTTTGGAACACGTTCAGATTTCTGATTGCTTTGTTTCTAATCCTCTCCCTGATTGAAGCTCAACTTCAAATGAAGACATGCACTGTCAAACAAATTAAAACAGAATTAGTGCTGGATTATGATTTAAAAATGAGTAACCAGAAGGTTCCATCCCCACAAAAGGGTGGACAGAAATGTAGGATTTTGATGTTCAAGGTGGAAGAGGCAAAACAAGAGTTAAAGGATGTTGTTGAGTTCCTGAGAAACCCAGAGAGATTTAAAAGGCTTGGCGGAAAAATGCAAACTGGAGTGCTTCTAATTGGCTCACCAGGAACAGGCAAGACTCTTCTAGCCAAGGCTGTCGCAGGCGAGGCCGGAGTACCATTCTTTTTCTGCTCTGGTTCAGAGTTTGACGAAATGTTTGTTGGAGTCGGAGCTGCACGAGTCAGAAATCTCTTTTCTAAAATGTGGATTTTTCTTAAATCAAATCCTTCTTGTAACAACAAGGCCCCAGTCACTGAGTCCTCCTCTGACATGATGAGCATTGTGAAGCAAGAGATCACCATGACAACATACAATGTAGCTACAGCTTTTACTCTAGCTACTGCAGCTAGAGAACATGCTCCTTGCATTGTGTTCATTGACGAGCTGGATGCTATTGGAGGTACCAGAATTGTTCACGATCATCAGCCCTACTCGAGAATGACCCTAAATCAGTTACTTGTTGAACTGGATGGATTTGACAAATCAGAAGGAATCGTTGTGATTGGAGCAACAAACTTCCCTGAAGTGCTTGACAAGGCGCTTGTCAGACCTGGTAGATTTGACACCAAGATAACTGTACCCATGCCTGATGTCAAAGGTCGTCACGACATCCTCAAGCTACATCTGAAGAATGTACAAGTTGCTGACGATGTCAAGATAGAACAGCTTGCCAGAGGAACTGTTGGCTTCTCAGGTGCGGACCTAGCTAACATGGTAAATGCTGCAGCAATTTACGCTGCAAGTGAAGGCGACACAAATGTTACAACCAAGCATCTTGAATTTGCAAAAGACAAAATTATCATGGGCCCTGAACGAAAGAGTGCAGTCATTGAGGCCAAGAACAGGGAATTGGTGGCATATCATGAGGGTGGACATGCACTGGTGGCCCTGTACACTCCAGAAGCTTTGCCGATACACAAAGCAACCATTGTACCACGTGGCCAGGCGTTGGGAATGGTTTCCCAGTTGCCTGAAAAAGACGAGTTAAACTGGTCTAAAGCCCAGCTGCTAGCAAGGCTTGATGTAGCAATGGGCGGCCGAGTAGCAGAAGAGCTTATCTTCGGCAAAGAAAACATAACAATGGGAGCTGCAAGTGATATGGAATCTTCAAATACCATCGCACGCGCCATGGTGTCTATGTACGGCATGAGTGACAAGGTTGGAATGGTCCAAGTGAAGGATGTTGAGAAATCGAGCCCTGAGCTACAGGCGCTGATTGAAAGCGAAGTCAAGCAACTTCTTAAGGATTCATACGAGAGAGCCAAGACTATACTCCAGACGCATTCCAAGGAACATAACCGTTTAGCGGAAGCTCTGTTGAAATACGAGACTCTTGACTTACAAGAAATCAAGCAGGTTATCCAAGGAAAACAGCTCTCTAGAAGTCTGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8LQJ9	ATP-dependent zinc metalloprotease FTSH 4, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=FTSH4 PE=3 SV=1
O88967	ATP-dependent zinc metalloprotease YME1L1 OS=Mus musculus OX=10090 GN=Yme1l1 PE=1 SV=1
Q96TA2	ATP-dependent zinc metalloprotease YME1L1 OS=Homo sapiens OX=9606 GN=YME1L1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003080 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01434 all species →	Peptidase_M41	Peptidase family M41	Domain	Interproscan
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF17862 all species →	AAA_lid_3	AAA+ lid domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003960 all species →	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR000642 all species →	Domain	Peptidase M41	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR037219 all species →	Homologous_superfamily	Peptidase M41-like	Interproscan
IPR041569 all species →	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23076 all species →	METALLOPROTEASE M41 FTSH	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004176 all species →	Molecular Function	ATP-dependent peptidase activity	Interproscan
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0006515 all species →	Biological Process	protein quality control for misfolded or incompletely synthesized proteins	Interproscan
GO:0007005 all species →	Biological Process	mitochondrion organization	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08955	YME1; ATP-dependent metalloprotease	EC:3.4.24.-	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.