Genomic Location: Ap7:269600...273331
NR annotation: XP_020609206.1, uncharacterized protein LOC110047805 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap7.27 |
| Transcript |
| evm.model.Ap7.27 |
| Protein |
| evm.model.Ap7.27 |
| UniProt accession | Description |
|---|---|
| P23711 | Heme oxygenase 2 OS=Rattus norvegicus OX=10116 GN=Hmox2 PE=1 SV=1 |
| Q2PG53 | Heme oxygenase 2 OS=Macaca fascicularis OX=9541 GN=HMOX2 PE=2 SV=1 |
| P43242 | Heme oxygenase 2 OS=Oryctolagus cuniculus OX=9986 GN=HMOX2 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001641 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01126 all species → | Heme_oxygenase | Heme oxygenase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016084 all species → | Homologous_superfamily | Haem oxygenase-like, multi-helical | Interproscan |
| IPR002051 all species → | Family | Haem oxygenase | Interproscan |
| IPR018207 all species → | Conserved_site | Haem oxygenase conserved site | Interproscan |
| IPR016053 all species → | Family | Haem oxygenase-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10720 all species → | HEME OXYGENASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004392 all species → | Molecular Function | heme oxygenase (decyclizing) activity | Interproscan |
| GO:0006788 all species → | Biological Process | heme oxidation | Interproscan |
| GO:0006979 all species → | Biological Process | response to oxidative stress | Interproscan |
| GO:0020037 all species → | Molecular Function | heme binding | Interproscan |
| GO:0042167 all species → | Biological Process | heme catabolic process | Interproscan |
| GO:0055072 all species → | Biological Process | obsolete iron ion homeostasis | Interproscan |
evm.model.Ap7.27.Transcript abundance of evm.model.Ap7.27 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
