Genomic Location: Ap7:3349105...3357151
NR annotation: XP_020607720.1, uncharacterized protein LOC110046367 isoform X2 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap7.270 |
| Transcript |
| evm.model.Ap7.270 |
| Protein |
| evm.model.Ap7.270 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004510 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04721 all species → | PAW | PNGase C-terminal domain, mannose-binding module PAW | Domain | Interproscan |
| PF00168 all species → | C2 | C2 domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006588 all species → | Domain | Peptide N glycanase, PAW domain | Interproscan |
| IPR038680 all species → | Homologous_superfamily | PAW domain superfamily | Interproscan |
| IPR000008 all species → | Domain | C2 domain | Interproscan |
| IPR008979 all species → | Homologous_superfamily | Galactose-binding-like domain superfamily | Interproscan |
| IPR035892 all species → | Homologous_superfamily | C2 domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45716 all species → | BITESIZE, ISOFORM I | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006516 all species → | Biological Process | glycoprotein catabolic process | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0006887 all species → | Biological Process | exocytosis | Interproscan |
| GO:0042043 all species → | Molecular Function | neurexin family protein binding | Interproscan |
| GO:0070382 all species → | Cellular Component | exocytic vesicle | Interproscan |
evm.model.Ap7.270.Transcript abundance of evm.model.Ap7.270 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
