Gene detail

Detailed information of evm.model.Ap7.2782 in Astrangia poculata

Genomic Location: Ap7:29408318...29424145
NR annotation: KAJ7391773.1, Partitioning defective 3 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap7.2782

atgaaggtcacagtgtgttttgacgcggttcgtgtcattgtaccctgtggaaatggcgacctaaccgtatgtgagctcatagaacgagcggtttcaagatatcggaaagctacaaacaagcctcccgatgagttcattcaagtgctttttctagagacgagcgaggaccatggaattctagatcctgatgacctgctctgtgatgtagtcgacgacaaagacaagttacttgcagtgtttcaagaaggttcctcacagacacttcaccggccggcacaaaatggcggttatggaacaagcacgtcatctataggaacagcaagtcctgatctctctcagcatgaagatgagactccgaaatatatacaggaaccccctctgaaaccatatgcatcaaacaacaacaaagctgaaaacactaatggtgaaatcaaaactgtatccagggtaacgaagagccctccgccaccagttcctccgaaacctgtaagacatatcagtgtcaacagcagtagaacttcttatgttgagtctataccatcggaagattctggaatatctacacatgatgaacgatttagaataggttcagattcatcgaagtccgaaacaattgagaatgttgtagtaaaacctacaatttataggacaggagaaatgacgtttgttgcaatagggatgcctgttaaaacgcctgttaaacctgcagtgtacaatggtcatgcaaacatagacagaagacgattttcgtcaacaagttctgatcatgctgataatgaacacagtaatagtgaggtggaagaggaaacattttcattgggtcggaactcggcacggaaatctatgtttgttgacagccctatgctggacagatgggctgagttacaagaagagagaatgtttgtgggtaataatcatagagaggagcccgtgagtactgtaacatcaccatcagagccaagctccaatgaaccagactttgctgttaaataccatgatgatcagcactcggaaagctcggagagtagtggggagcctgatatgcttatgattgagttaaagcgcgaggatccactagaaccattagggttcacagtagcaggatacagaacggcagacagcagggaacttggtctcattgttcgtaacatttcacctgatggctgtgcagcaagagatggaagacttgagatcgccgataggattgtggaggttaatggatggagtctaatggatatgccaaatgaaagagctgaggagctgtttgctgcagcaatcaaggcatctgtagtaaaccttggcgtgtcacggtcgcattcatttgttcctggacagaaaagtgacgcacaacatgaagaggaaatcatacaagctcggcctgcggcggaaaataaccaatcgccagagccgctagaacaatcacagagagaaatattgcctttaacaccccagtcgctcattggttcaccttcaattcctgatagcagtttcaagaaagtcaacaagagaattcttattgagctgatgaaaggaaatgacggtcttgggtttagcatcacaacccgtgacaatccagcgggaggtaatacgccaatattcgtcaagagtatcttgccaaaaggtgctgccatcgaaggtggacagttgaaagctggagatcaagttgtggaggtgaacggacagaaaatgaacggtaaaagccaagcggaagctgtaaacgcacttcgaagcaccaggggtctggtgtcgcttttggttcaaagagaggaagtcgttcagtcaccccgggcgcctgctatagaggtcaatgaagacagcttgcgccattttagagaagaaggtctccaagtgcttacgttcaaaattccgctggacatagctggcgcggcaggcctgggcgtgagtgtgaaaggcaagtcacgtgctacgtctgaacaaggtcgagacagtcctcaggacaaaggcatctttgtcaagtccatcattcctgggggcgctgcagccaaagatggccgtctatgccctgacgaccagctccttcgtgtgaacaataaatcattagttggtctaacaaatcaagcggctatggagacactaagactcgctatgcagtccacgagacccaatcaagctttcattgatgtcaccatcgcgcgagaacaagacgatactgtcccaccccctggggagttactccacagtagctcccttgagaaactgaatgcgcctgatcaagagaggcccatagaagcgggctctgatgaaaagcctgtgaaagagccacaaaggagcacctccgagactgatggcagttttcttaataaagaaagacttcccaacaatttagaagaccagtttaacgaatcgatcaccagtagaaatctgtctcctattcgtgcgaggaatgcggtgcatcgtaacgactcctactgcgtggccgtcaataaaagccaaagtcctggatcccagttgtacagcccttttaagcaacgcccaattcatcgacccagtcctttagccatgggtaatgaccgggcgcaacccctcgctcccagttcactggcgaggacgtcgacaccagcggaaggtgattctactgccgcattaaacgttccttcaggaagacccactagcaccgttgccataccaacgccgcctttgggcagcaccgacgagagaccctcgggacctggtagcccttcgcaggcacctgcaaagccacctccacctcaacccccaccaagatgggactcaacagcggataattaccgtttaccaacgggactccagcttaggctcaaaatgccggacgcccagagaacccaagagcaaagagctcaggaaggtggaagcaatgccagcacccccagcaccccacccccacccactcagtttaagaacccttcgcccacacgggaataccctccttcctacgaccaggccgtggcccgcctcgggaggtcgccacacgcttcagtaagttcagaacctacgactccgagcaaagagcaacgaaaatcatggagtgaagaaaatgctgaaaatcaaatcatcgcccctcccagccagttttcctctgaggacattgataatcctttccaaagagagggctttgggcgcctgtccatctcggaaaaaagaggccgagcggctctggacgctaggaagtcggatttcttcatgaaacgagatcaggagagaaatgaaacggatagctcagaagacgccgaagtagaagaggaagaaacaaaaccaacaattaaacaccatcccctgagaaaggccgactcagatgatctgttacggcaacagttcgaggaagattccaaggaagaagaaagacgaccttctccttatggccgcgggatgcaaaaaagtcgttcaactggtcagctgaaacttgtgggtctgaagaacgacaaatacaagaagtcaaaaagcaacgacaacttgagttttactaaagctgtggaaaatgccaaccgatcttatccaggtgatgtacagaatggtcacgcacagttcagtcatagtgtttcggaagaggaagtgcccatcactatgaagagtaacgcggacttcactgcagtgcaacagaaacttgcagtgaagaagcctttctacaaaggaatcagttctgtgttcaagatcggcaaaaataagcgcggagattacaatctctcagataacgatggcccggcgttcaaacacacgtacaacagagaagcgctcatcgacttcccagccgagcaaagataccgacagcttgtcaatcattatggtcaggagaaacccccggaccctcggtacaagtcgcttccgactcgcggacgaaagaaacacgaagccagagaaagggcgctcgaagaagcacgacccgcgcagacgatgaaagtcgggagagtgacagttactgcgcccacaagggtttga

Transcript

evm.model.Ap7.2782

ATGAAGGTCACAGTGTGTTTTGACGCGGTTCGTGTCATTGTACCCTGTGGAAATGGCGACCTAACCGTATGTGAGCTCATAGAACGAGCGGTTTCAAGATATCGGAAAGCTACAAACAAGCCTCCCGATGAGTTCATTCAAGTGCTTTTTCTAGAGACGAGCGAGGACCATGGAATTCTAGATCCTGATGACCTGCTCTGTGATGTAGTCGACGACAAAGACAAGTTACTTGCAGTGTTTCAAGAAGGTTCCTCACAGACACTTCACCGGCCGGCACAAAATGGCGGTTATGGAACAAGCACGTCATCTATAGGAACAGCAAGTCCTGATCTCTCTCAGCATGAAGATGAGACTCCGAAATATATACAGGAACCCCCTCTGAAACCATATGCATCAAACAACAACAAAGCTGAAAACACTAATGGTGAAATCAAAACTGTATCCAGGGTAACGAAGAGCCCTCCGCCACCAGTTCCTCCGAAACCTGTAAGACATATCAGTGTCAACAGCAGTAGAACTTCTTATGTTGAGTCTATACCATCGGAAGATTCTGGAATATCTACACATGATGAACGATTTAGAATAGGTTCAGATTCATCGAAGTCCGAAACAATTGAGAATGTTGTAGTAAAACCTACAATTTATAGGACAGGAGAAATGACGTTTGTTGCAATAGGGATGCCTGTTAAAACGCCTGTTAAACCTGCAGTGTACAATGGTCATGCAAACATAGACAGAAGACGATTTTCGTCAACAAGTTCTGATCATGCTGATAATGAACACAGTAATAGTGAGGTGGAAGAGGAAACATTTTCATTGGGTCGGAACTCGGCACGGAAATCTATGTTTGTTGACAGCCCTATGCTGGACAGATGGGCTGAGTTACAAGAAGAGAGAATGTTTGTGGGTAATAATCATAGAGAGGAGCCCGTGAGTACTGTAACATCACCATCAGAGCCAAGCTCCAATGAACCAGACTTTGCTGTTAAATACCATGATGATCAGCACTCGGAAAGCTCGGAGAGTAGTGGGGAGCCTGATATGCTTATGATTGAGTTAAAGCGCGAGGATCCACTAGAACCATTAGGGTTCACAGTAGCAGGATACAGAACGGCAGACAGCAGGGAACTTGGTCTCATTGTTCGTAACATTTCACCTGATGGCTGTGCAGCAAGAGATGGAAGACTTGAGATCGCCGATAGGATTGTGGAGGTTAATGGATGGAGTCTAATGGATATGCCAAATGAAAGAGCTGAGGAGCTGTTTGCTGCAGCAATCAAGGCATCTGTAGTAAACCTTGGCGTGTCACGGTCGCATTCATTTGTTCCTGGACAGAAAAGTGACGCACAACATGAAGAGGAAATCATACAAGCTCGGCCTGCGGCGGAAAATAACCAATCGCCAGAGCCGCTAGAACAATCACAGAGAGAAATATTGCCTTTAACACCCCAGTCGCTCATTGGTTCACCTTCAATTCCTGATAGCAGTTTCAAGAAAGTCAACAAGAGAATTCTTATTGAGCTGATGAAAGGAAATGACGGTCTTGGGTTTAGCATCACAACCCGTGACAATCCAGCGGGAGGTAATACGCCAATATTCGTCAAGAGTATCTTGCCAAAAGGTGCTGCCATCGAAGGTGGACAGTTGAAAGCTGGAGATCAAGTTGTGGAGGTGAACGGACAGAAAATGAACGGTAAAAGCCAAGCGGAAGCTGTAAACGCACTTCGAAGCACCAGGGGTCTGGTGTCGCTTTTGGTTCAAAGAGAGGAAGTCGTTCAGTCACCCCGGGCGCCTGCTATAGAGGTCAATGAAGACAGCTTGCGCCATTTTAGAGAAGAAGGTCTCCAAGTGCTTACGTTCAAAATTCCGCTGGACATAGCTGGCGCGGCAGGCCTGGGCGTGAGTGTGAAAGGCAAGTCACGTGCTACGTCTGAACAAGGTCGAGACAGTCCTCAGGACAAAGGCATCTTTGTCAAGTCCATCATTCCTGGGGGCGCTGCAGCCAAAGATGGCCGTCTATGCCCTGACGACCAGCTCCTTCGTGTGAACAATAAATCATTAGTTGGTCTAACAAATCAAGCGGCTATGGAGACACTAAGACTCGCTATGCAGTCCACGAGACCCAATCAAGCTTTCATTGATGTCACCATCGCGCGAGAACAAGACGATACTGTCCCACCCCCTGGGGAGTTACTCCACAGTAGCTCCCTTGAGAAACTGAATGCGCCTGATCAAGAGAGGCCCATAGAAGCGGGCTCTGATGAAAAGCCTGTGAAAGAGCCACAAAGGAGCACCTCCGAGACTGATGGCAGTTTTCTTAATAAAGAAAGACTTCCCAACAATTTAGAAGACCAGTTTAACGAATCGATCACCAGTAGAAATCTGTCTCCTATTCGTGCGAGGAATGCGGTGCATCGTAACGACTCCTACTGCGTGGCCGTCAATAAAAGCCAAAGTCCTGGATCCCAGTTGTACAGCCCTTTTAAGCAACGCCCAATTCATCGACCCAGTCCTTTAGCCATGGGTAATGACCGGGCGCAACCCCTCGCTCCCAGTTCACTGGCGAGGACGTCGACACCAGCGGAAGGTGATTCTACTGCCGCATTAAACGTTCCTTCAGGAAGACCCACTAGCACCGTTGCCATACCAACGCCGCCTTTGGGCAGCACCGACGAGAGACCCTCGGGACCTGGTAGCCCTTCGCAGGCACCTGCAAAGCCACCTCCACCTCAACCCCCACCAAGATGGGACTCAACAGCGGATAATTACCGTTTACCAACGGGACTCCAGCTTAGGCTCAAAATGCCGGACGCCCAGAGAACCCAAGAGCAAAGAGCTCAGGAAGGTGGAAGCAATGCCAGCACCCCCAGCACCCCACCCCCACCCACTCAGTTTAAGAACCCTTCGCCCACACGGGAATACCCTCCTTCCTACGACCAGGCCGTGGCCCGCCTCGGGAGGTCGCCACACGCTTCAGTAAGTTCAGAACCTACGACTCCGAGCAAAGAGCAACGAAAATCATGGAGTGAAGAAAATGCTGAAAATCAAATCATCGCCCCTCCCAGCCAGTTTTCCTCTGAGGACATTGATAATCCTTTCCAAAGAGAGGGCTTTGGGCGCCTGTCCATCTCGGAAAAAAGAGGCCGAGCGGCTCTGGACGCTAGGAAGTCGGATTTCTTCATGAAACGAGATCAGGAGAGAAATGAAACGGATAGCTCAGAAGACGCCGAAGTAGAAGAGGAAGAAACAAAACCAACAATTAAACACCATCCCCTGAGAAAGGCCGACTCAGATGATCTGTTACGGCAACAGTTCGAGGAAGATTCCAAGGAAGAAGAAAGACGACCTTCTCCTTATGGCCGCGGGATGCAAAAAAGTCGTTCAACTGGTCAGCTGAAACTTGTGGGTCTGAAGAACGACAAATACAAGAAGTCAAAAAGCAACGACAACTTGAGTTTTACTAAAGCTGTGGAAAATGCCAACCGATCTTATCCAGGTGATGTACAGAATGGTCACGCACAGTTCAGTCATAGTGTTTCGGAAGAGGAAGTGCCCATCACTATGAAGAGTAACGCGGACTTCACTGCAGTGCAACAGAAACTTGCAGTGAAGAAGCCTTTCTACAAAGGAATCAGTTCTGTGTTCAAGATCGGCAAAAATAAGCGCGGAGATTACAATCTCTCAGATAACGATGGCCCGGCGTTCAAACACACGTACAACAGAGAAGCGCTCATCGACTTCCCAGCCGAGCAAAGATACCGACAGCTTGTCAATCATTATGGTCAGGAGAAACCCCCGGACCCTCGGTACAAGTCGCTTCCGACTCGCGGACGAAAGAAACACGAAGCCAGAGAAAGGGCGCTCGAAGAAGCACGACCCGCGCAGACGATGAAAGTCGGGAGAGTGACAGTTACTGCGCCCACAAGGGTTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z340	Partitioning defective 3 homolog OS=Rattus norvegicus OX=10116 GN=Pard3 PE=1 SV=1
Q99NH2	Partitioning defective 3 homolog OS=Mus musculus OX=10090 GN=Pard3 PE=1 SV=2
Q8TEW0	Partitioning defective 3 homolog OS=Homo sapiens OX=9606 GN=PARD3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002915 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF12053 all species →	Par3_HAL_N_term	N-terminal of Par3 and HAL proteins	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR021922 all species →	Domain	Par3/HAL, N-terminal	Interproscan
IPR052213 all species →	Family	Partitioning defective 3 homolog	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16484 all species →	PARTITIONING DEFECTIVE 3 RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0005938 all species →	Cellular Component	cell cortex	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0008104 all species →	Biological Process	protein localization	Interproscan
GO:0016324 all species →	Cellular Component	apical plasma membrane	Interproscan
GO:0030010 all species →	Biological Process	establishment of cell polarity	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0043296 all species →	Cellular Component	apical junction complex	Interproscan
GO:0045197 all species →	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan
GO:0051660 all species →	Biological Process	establishment of centrosome localization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap7.2782.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.