Gene detail

Detailed information of evm.model.Ap7.2818 in Astrangia poculata

Genomic Location: Ap7:29713773...29732720
NR annotation: XP_022803594.1, probable protein disulfide-isomerase A4 [Stylophora pistillata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap7.2818

atggcgaagaaaaattattggttgaatagtttgctctttcttgcatttctcgtaggatctctccaagccaagaagaaggtagacaggagttccatcatagacgtaaatgatataaaacctttcaagaaattacaaagaacccacacgaatttactagttttgtttgcacagagcgagcgtgatgcttcaaaaagatttgatgttctggcacaagttgcagaggaaattaaaggaaagggaacaatagcatatataaattgtggggaaagcaaagataccaaaaaattatgcaagaagcttaaagtttcaccccaacctgttgtgctaaagcattacaaagatggaaacttcaataaagattacgataggaagaatacagttaagtcaatgttaaattttttgaatgatcctacgggggagatgccgtgggaggaagaagagggaacagaggatgtacgacatgttaaaactagccaggaatttaccaaactgacaacaaaagagaagaagccaataatggtcatgttctatgctccatggtgtggatactgtaagaagttgaaacctgactatgctttggctgctactgaactcaaaggagaagctattatggctggaatggatgtggacacctatgaaggatatcctgtgagagaacaatacaacatcactggatttccaacactcatatattttgaaggtggtgaagaaaagtatcgttatgcaggaaaacatgacaaagattctcttgtggagtggatgagaaatcctgcaccttcaacccctccagctaaagaagaagagtggagtgacatacccagtgaagttgttcatctcaaagatgacacatttgatgattttattgctaacaatccatctgttctagtcatgttctatgctccatggtgtggacactgtaaagctatgaaacctgaatacacagctgcagcaaaaactatgaaagatgaagaggtgtcaggtgtgatagcagcagtagatgcaacaaaggcaactgaagtagccaagagattcaaaatcgagggttacccaacagtgaaatatttcaaagatggtgaagttgcctttgatgtaaatgagagaacggctgataagatagttgaattcatgaaggatccaaaggaaccacccccaccccctcccccagagaaggattggcatgaaatccccagcgaggtgaagcaccttacagatgagacgttcaaaggatttctgaagaagaagaaacatgtcttggtcatgttttatgctccatggtgtggtcactgcaagaaagccaaacctgaattaatggatgccgctaagcatgatgtagagaacaccaaggttgcatatgccgctgttgactgcacaaaacacactgcagtgtgtaaccaatatgaagttaaaggttaccccactttccgttacttcaactacggcaagaaggacttcaagtacactgggggtcgggtggctaaggatttcatccaattcatggaggatccccgtgagggtcccccacccccaccccctgaaccagagtggaaagacgtatccagccgcgtgactcacttaactgatgatacttttgatgactttgtgaagacacatgattcagttcttgtcatgttctatgcaccatggtgtggtcactgcaaagcaatgaagccagcatacatggaggctgcagacgagttgcatagcaaaaatgctcgtagcgtcctagtagctgtggattgcacaaaagagaaatctctgtccaagaaatttgatattgaaggattcccaacaatcaagtactttagaaagggcgagttttcttctgaatacatgaaagcaaggacgaaggaggacttggtggacttcttgttgatctctgaagattcagaaccggctgaggccaaaccagctaaacctgaaaaaccagctgaaccagcttggagtgacgaggatacagatgtggtccatttaacagcgagcacattccaggaatttatccagacacacacctcagctttagtcatgttttatgctccctggtgtccacactgcaaaaaaatcaaacccgaattttcacaagtggcaaaggaagtcaacactgagaaaaaggttcctggtggtctgggtgcagtagattgcactgtggataaagatctgtgtgctgaacaggaagtcaagggttatcccacactgaaatacttcaaagatggcgagtttgcctataagtacaccaagaaaaggaaagcggaagatatgctcgcttttatgaagaatccccagaagcccgcccctcccgctccgccacccgactggagtaaggagcctggtaaggtgcatttcctgacaaacgagacgtgggataaattcatacaggaacattcctcggtgctggtcctgctatttgctccttggtgtggttattgtaagtccatgaagccaaactacttcaaagctgctgagatcctgaatgaagaacttccatccgttgcgttaactgccattgactgcactaaattcagggacgtctgtaaacggattgaaatcaaaggattcccaacagtgaaatacttcaaggacggcgtgtttgaaaaagagtatgacggagacagatcggtagaggatttaattacctttatgaaaactatgtctggttctgacgataaacttgacgaaaaggaacccaccaaagaagatgaacccgaaggattgaagatcttgaacactgcaaacttcgagacattcttgacccagacagagcacgtgatagttatgttttatgctccatggtgcggtcattgtcagaatgcaaagcctaaattcctgaaagcttcagaagcatttgccgaggaaccaaacaaggcttttaccgccgtggactgtactcaggacagtgatttatgcgataaacaaggcgttaacggttacccgaccatcaagtattacagatatggcgcttttgtggtggaatacgatggggaccgaacagagcaagacttcatggcatttatgaaagcacctcctcaccccctcccccctgatcagcccgacagcaaaccggatgacaaacgagacgaactttaa

Transcript

evm.model.Ap7.2818

ATGGCGAAGAAAAATTATTGGTTGAATAGTTTGCTCTTTCTTGCATTTCTCGTAGGATCTCTCCAAGCCAAGAAGAAGGTAGACAGGAGTTCCATCATAGACGTAAATGATATAAAACCTTTCAAGAAATTACAAAGAACCCACACGAATTTACTAGTTTTGTTTGCACAGAGCGAGCGTGATGCTTCAAAAAGATTTGATGTTCTGGCACAAGTTGCAGAGGAAATTAAAGGAAAGGGAACAATAGCATATATAAATTGTGGGGAAAGCAAAGATACCAAAAAATTATGCAAGAAGCTTAAAGTTTCACCCCAACCTGTTGTGCTAAAGCATTACAAAGATGGAAACTTCAATAAAGATTACGATAGGAAGAATACAGTTAAGTCAATGTTAAATTTTTTGAATGATCCTACGGGGGAGATGCCGTGGGAGGAAGAAGAGGGAACAGAGGATGTACGACATGTTAAAACTAGCCAGGAATTTACCAAACTGACAACAAAAGAGAAGAAGCCAATAATGGTCATGTTCTATGCTCCATGGTGTGGATACTGTAAGAAGTTGAAACCTGACTATGCTTTGGCTGCTACTGAACTCAAAGGAGAAGCTATTATGGCTGGAATGGATGTGGACACCTATGAAGGATATCCTGTGAGAGAACAATACAACATCACTGGATTTCCAACACTCATATATTTTGAAGGTGGTGAAGAAAAGTATCGTTATGCAGGAAAACATGACAAAGATTCTCTTGTGGAGTGGATGAGAAATCCTGCACCTTCAACCCCTCCAGCTAAAGAAGAAGAGTGGAGTGACATACCCAGTGAAGTTGTTCATCTCAAAGATGACACATTTGATGATTTTATTGCTAACAATCCATCTGTTCTAGTCATGTTCTATGCTCCATGGTGTGGACACTGTAAAGCTATGAAACCTGAATACACAGCTGCAGCAAAAACTATGAAAGATGAAGAGGTGTCAGGTGTGATAGCAGCAGTAGATGCAACAAAGGCAACTGAAGTAGCCAAGAGATTCAAAATCGAGGGTTACCCAACAGTGAAATATTTCAAAGATGGTGAAGTTGCCTTTGATGTAAATGAGAGAACGGCTGATAAGATAGTTGAATTCATGAAGGATCCAAAGGAACCACCCCCACCCCCTCCCCCAGAGAAGGATTGGCATGAAATCCCCAGCGAGGTGAAGCACCTTACAGATGAGACGTTCAAAGGATTTCTGAAGAAGAAGAAACATGTCTTGGTCATGTTTTATGCTCCATGGTGTGGTCACTGCAAGAAAGCCAAACCTGAATTAATGGATGCCGCTAAGCATGATGTAGAGAACACCAAGGTTGCATATGCCGCTGTTGACTGCACAAAACACACTGCAGTGTGTAACCAATATGAAGTTAAAGGTTACCCCACTTTCCGTTACTTCAACTACGGCAAGAAGGACTTCAAGTACACTGGGGGTCGGGTGGCTAAGGATTTCATCCAATTCATGGAGGATCCCCGTGAGGGTCCCCCACCCCCACCCCCTGAACCAGAGTGGAAAGACGTATCCAGCCGCGTGACTCACTTAACTGATGATACTTTTGATGACTTTGTGAAGACACATGATTCAGTTCTTGTCATGTTCTATGCACCATGGTGTGGTCACTGCAAAGCAATGAAGCCAGCATACATGGAGGCTGCAGACGAGTTGCATAGCAAAAATGCTCGTAGCGTCCTAGTAGCTGTGGATTGCACAAAAGAGAAATCTCTGTCCAAGAAATTTGATATTGAAGGATTCCCAACAATCAAGTACTTTAGAAAGGGCGAGTTTTCTTCTGAATACATGAAAGCAAGGACGAAGGAGGACTTGGTGGACTTCTTGTTGATCTCTGAAGATTCAGAACCGGCTGAGGCCAAACCAGCTAAACCTGAAAAACCAGCTGAACCAGCTTGGAGTGACGAGGATACAGATGTGGTCCATTTAACAGCGAGCACATTCCAGGAATTTATCCAGACACACACCTCAGCTTTAGTCATGTTTTATGCTCCCTGGTGTCCACACTGCAAAAAAATCAAACCCGAATTTTCACAAGTGGCAAAGGAAGTCAACACTGAGAAAAAGGTTCCTGGTGGTCTGGGTGCAGTAGATTGCACTGTGGATAAAGATCTGTGTGCTGAACAGGAAGTCAAGGGTTATCCCACACTGAAATACTTCAAAGATGGCGAGTTTGCCTATAAGTACACCAAGAAAAGGAAAGCGGAAGATATGCTCGCTTTTATGAAGAATCCCCAGAAGCCCGCCCCTCCCGCTCCGCCACCCGACTGGAGTAAGGAGCCTGGTAAGGTGCATTTCCTGACAAACGAGACGTGGGATAAATTCATACAGGAACATTCCTCGGTGCTGGTCCTGCTATTTGCTCCTTGGTGTGGTTATTGTAAGTCCATGAAGCCAAACTACTTCAAAGCTGCTGAGATCCTGAATGAAGAACTTCCATCCGTTGCGTTAACTGCCATTGACTGCACTAAATTCAGGGACGTCTGTAAACGGATTGAAATCAAAGGATTCCCAACAGTGAAATACTTCAAGGACGGCGTGTTTGAAAAAGAGTATGACGGAGACAGATCGGTAGAGGATTTAATTACCTTTATGAAAACTATGTCTGGTTCTGACGATAAACTTGACGAAAAGGAACCCACCAAAGAAGATGAACCCGAAGGATTGAAGATCTTGAACACTGCAAACTTCGAGACATTCTTGACCCAGACAGAGCACGTGATAGTTATGTTTTATGCTCCATGGTGCGGTCATTGTCAGAATGCAAAGCCTAAATTCCTGAAAGCTTCAGAAGCATTTGCCGAGGAACCAAACAAGGCTTTTACCGCCGTGGACTGTACTCAGGACAGTGATTTATGCGATAAACAAGGCGTTAACGGTTACCCGACCATCAAGTATTACAGATATGGCGCTTTTGTGGTGGAATACGATGGGGACCGAACAGAGCAAGACTTCATGGCATTTATGAAAGCACCTCCTCACCCCCTCCCCCCTGATCAGCCCGACAGCAAACCGGATGACAAACGAGACGAACTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5I0H9	Protein disulfide-isomerase A5 OS=Rattus norvegicus OX=10116 GN=Pdia5 PE=2 SV=1
Q921X9	Protein disulfide-isomerase A5 OS=Mus musculus OX=10090 GN=Pdia5 PE=1 SV=1
Q14554	Protein disulfide-isomerase A5 OS=Homo sapiens OX=9606 GN=PDIA5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004305 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00085 all species →	Thioredoxin	Thioredoxin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR046374 all species →	Domain	Protein disulfide-isomerase A5, TRX (a) domain	Interproscan
IPR013766 all species →	Domain	Thioredoxin domain	Interproscan
IPR017937 all species →	Conserved_site	Thioredoxin, conserved site	Interproscan
IPR051063 all species →	Family	Protein Disulfide Isomerase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45672 all species →	PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003756 all species →	Molecular Function	protein disulfide isomerase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09583	PDIA5; protein disulfide-isomerase A5	EC:5.3.4.1	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.