Gene detail

Detailed information of evm.model.Ap7.2827 in Astrangia poculata

Genomic Location: Ap7:29816680...29844548
NR annotation: CAH3145427.1, unnamed protein product [Porites lobata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap7.2827

atggcggctgtgcgggaccaaaacagctctcttccaaacttgaagaacttgacggcatggaacttcggcaaactgccagagcaacagaacaagttgctgcaagatctggtcggtccccacatacagtcgttcaatttcatgctagaagaaggcctttcgcttgcagctcagactatccgtcctcaagaattcttgctttcaaatggacaaaaggccacaatatacttcacagatgcttctgttggagttccaacgttgtcagaaaacaacttgcatgcttctcagatgaaggtctttccttctgagtgtcgggaacgtggtgctacttacaaagccaaacttcaagtaaccctgcaatggaaacttgacaaccagctacaaggaagtgttacaaaggtcattggaaatattccaataatggtcaagagtaacaactgttccttggcaaagctgacacctaatgaactggtccgcaagcatgaagaggcagaggaggctggaggttattttataatcaatggaattgaaaaagtaataagaatgcttatcctaccaagaagaaattttccaatagccatcatcagaccatcgtggaagagtagaggacctttatacacagaatatggagtacaaatgagatctgttagaaaagaccagacagctgtgaatatgactcttcattacctatcagatggagttattatgatttgtatcaacaatgaaaaagaattattttatgttccacttgttttcatcctcaaagccttagtaaatattacagaccaacaaatttaccgtgatctggtcgcaggagaggaagataacagtttcctaaaagactgtgttgccaatatgcttaggacagcccatgcagcaggagcttctacacaacagtctattctcaaatttattggtgaaagatttagagtaaagatgagattaccagactggtactcagatgaagatgtagctcgttatgttctacaacagtgtgtttgtgttcatctggatggaaatgtggacaagtttaatttattggtttttatggcaaggaagctatatgcgttagcactagaaaaatgtgcaccagagtcagctgataatcctatgatgcaagaagtactacttggtggtcatttatatcttatgtgtttaaaggaaaagttggaagtttggctatatcgtgtgcgagatgtcattgaaaaagctatgacaaaaaaacaagatttcaatttagatacagccagtttgctccaagccatgtcaaaaagtactagcatatcacaccaaatggaataccttctagctactggtaatctggtgtcaagaacaggtcttggacttatgcaggtatcaggtttttcagtggtggccgaccggctcaacttctacaggtttctgtcccatttccgctgcgtccacagaggttctttctttgctcagatgagaacaacttctgtaagaaagttattgccagaggcttggggatttctgtgtccagttcatactccagatggttctccttgcggtctgttgaaccacatggcggcatcttgtcaggttgtgaatattgtaccacagactgctcatttgcccagactgctgtgttcactgggaatgactctgaatgatgccccagctcctgctgacatgaagtcttgttatgtggttatattggatggtagagtacttggaagagttgacatggaccttgcaccttctcttgtaaacaggctccgcatgctaaaagtgcttggacaagaaaaggtccctcagttcctagaaatttgtcttgtgcccattacaagtgtagcaagtcaatatcctgccctctacatcttctctacgccagctcgaatgatgaggccagttctcaacctagcagctgataaagtggaaatgattggcacttttgagcaggtttacatgaatattgctattgttaaagaagaagctcatgagggggaaaccacacaccttgaattgaaacaaacaagcatgttgagtgccattgcaagtttaacaccatattctgattttaaccaaagtcctcgtaacatgtatcagtgtcagatgggaaaacaaacaatgggaacgccagctcaggcattaaaacatcgtggtgataacaaactatacaggatacagacaccacaaagtccacttgtgagacccactgctcatgatgagttagccattgataactacgctcttggaacaaatgctgttgtggctgtaatttcctacaccggatatgatatggaagatgcaatgatcctcaataaatcatcatttgagcgtggatttgcccatggcacagtgataaagtgcgagatagttgatcttaaaaaaattactgggaaaggttccggttcttcaagccttagatttggctgtcctcctaatgataagcgagttgaaggattccttgacattgatggcctcccaccaattggagccaagctggaaacagggaacccgtattactgttacattgacgacaatacaggtcaagcgaacatcaaaaaatacagcagtttggagaatgcaattgttgacgatgtaaaaattcttggaaatgatgacggcactggttcacttcagaaagctgccattaaattgagaatacagagaaacccaatcattggagacaagttctcaagtcggcatggacagaaaggaatttgtagccagaaatggccgcttgaaaatatgccttttacagaatcagggatgacaccggatatcatctttaatcctcacggcttcccctcgcgtatgacaattggtatgatgatagagagtatggctggaaaatcagccagcatcaatggaatagcgtacgacgctacaccgttcactttctctgaagatgatcctgctatcgattactttggaaacctcttaacagaatctggctacaactactacggcaccgaacgaatgtacagtggtactgacgggcgtgagtttgaggcagacatcttttttggagttgtttattatcaacgactgaggcacatggtagcagacaagtatcaggttcggacaacaggccctatagacatactgacacatcaaccagtccagggtcggaaaaaacaaggaggcattcggtttggtgaaatggaaagagacgcacttctggctcatggcacgtcttttctattgcaagatcggctcatgaactgctcagacagaacagtgggtcaggtgtgtaccaagtgtggcagcatactctcccccctactggacaaacctgccgttgaggtggcagctgcggctgcgcacagggagcggaagtggacttgcaaaacatgtgaaagcagcgagcacattcaactgttagctttcccttacgtgttccgttatcttgtggctgagttggcagggatgaatataaagacttctttggaagtgaaaagagttggacaataa

Transcript

evm.model.Ap7.2827

ATGGCGGCTGTGCGGGACCAAAACAGCTCTCTTCCAAACTTGAAGAACTTGACGGCATGGAACTTCGGCAAACTGCCAGAGCAACAGAACAAGTTGCTGCAAGATCTGGTCGGTCCCCACATACAGTCGTTCAATTTCATGCTAGAAGAAGGCCTTTCGCTTGCAGCTCAGACTATCCGTCCTCAAGAATTCTTGCTTTCAAATGGACAAAAGGCCACAATATACTTCACAGATGCTTCTGTTGGAGTTCCAACGTTGTCAGAAAACAACTTGCATGCTTCTCAGATGAAGGTCTTTCCTTCTGAGTGTCGGGAACGTGGTGCTACTTACAAAGCCAAACTTCAAGTAACCCTGCAATGGAAACTTGACAACCAGCTACAAGGAAGTGTTACAAAGGTCATTGGAAATATTCCAATAATGGTCAAGAGTAACAACTGTTCCTTGGCAAAGCTGACACCTAATGAACTGGTCCGCAAGCATGAAGAGGCAGAGGAGGCTGGAGGTTATTTTATAATCAATGGAATTGAAAAAGTAATAAGAATGCTTATCCTACCAAGAAGAAATTTTCCAATAGCCATCATCAGACCATCGTGGAAGAGTAGAGGACCTTTATACACAGAATATGGAGTACAAATGAGATCTGTTAGAAAAGACCAGACAGCTGTGAATATGACTCTTCATTACCTATCAGATGGAGTTATTATGATTTGTATCAACAATGAAAAAGAATTATTTTATGTTCCACTTGTTTTCATCCTCAAAGCCTTAGTAAATATTACAGACCAACAAATTTACCGTGATCTGGTCGCAGGAGAGGAAGATAACAGTTTCCTAAAAGACTGTGTTGCCAATATGCTTAGGACAGCCCATGCAGCAGGAGCTTCTACACAACAGTCTATTCTCAAATTTATTGGTGAAAGATTTAGAGTAAAGATGAGATTACCAGACTGGTACTCAGATGAAGATGTAGCTCGTTATGTTCTACAACAGTGTGTTTGTGTTCATCTGGATGGAAATGTGGACAAGTTTAATTTATTGGTTTTTATGGCAAGGAAGCTATATGCGTTAGCACTAGAAAAATGTGCACCAGAGTCAGCTGATAATCCTATGATGCAAGAAGTACTACTTGGTGGTCATTTATATCTTATGTGTTTAAAGGAAAAGTTGGAAGTTTGGCTATATCGTGTGCGAGATGTCATTGAAAAAGCTATGACAAAAAAACAAGATTTCAATTTAGATACAGCCAGTTTGCTCCAAGCCATGTCAAAAAGTACTAGCATATCACACCAAATGGAATACCTTCTAGCTACTGGTAATCTGGTGTCAAGAACAGGTCTTGGACTTATGCAGGTATCAGGTTTTTCAGTGGTGGCCGACCGGCTCAACTTCTACAGGTTTCTGTCCCATTTCCGCTGCGTCCACAGAGGTTCTTTCTTTGCTCAGATGAGAACAACTTCTGTAAGAAAGTTATTGCCAGAGGCTTGGGGATTTCTGTGTCCAGTTCATACTCCAGATGGTTCTCCTTGCGGTCTGTTGAACCACATGGCGGCATCTTGTCAGGTTGTGAATATTGTACCACAGACTGCTCATTTGCCCAGACTGCTGTGTTCACTGGGAATGACTCTGAATGATGCCCCAGCTCCTGCTGACATGAAGTCTTGTTATGTGGTTATATTGGATGGTAGAGTACTTGGAAGAGTTGACATGGACCTTGCACCTTCTCTTGTAAACAGGCTCCGCATGCTAAAAGTGCTTGGACAAGAAAAGGTCCCTCAGTTCCTAGAAATTTGTCTTGTGCCCATTACAAGTGTAGCAAGTCAATATCCTGCCCTCTACATCTTCTCTACGCCAGCTCGAATGATGAGGCCAGTTCTCAACCTAGCAGCTGATAAAGTGGAAATGATTGGCACTTTTGAGCAGGTTTACATGAATATTGCTATTGTTAAAGAAGAAGCTCATGAGGGGGAAACCACACACCTTGAATTGAAACAAACAAGCATGTTGAGTGCCATTGCAAGTTTAACACCATATTCTGATTTTAACCAAAGTCCTCGTAACATGTATCAGTGTCAGATGGGAAAACAAACAATGGGAACGCCAGCTCAGGCATTAAAACATCGTGGTGATAACAAACTATACAGGATACAGACACCACAAAGTCCACTTGTGAGACCCACTGCTCATGATGAGTTAGCCATTGATAACTACGCTCTTGGAACAAATGCTGTTGTGGCTGTAATTTCCTACACCGGATATGATATGGAAGATGCAATGATCCTCAATAAATCATCATTTGAGCGTGGATTTGCCCATGGCACAGTGATAAAGTGCGAGATAGTTGATCTTAAAAAAATTACTGGGAAAGGTTCCGGTTCTTCAAGCCTTAGATTTGGCTGTCCTCCTAATGATAAGCGAGTTGAAGGATTCCTTGACATTGATGGCCTCCCACCAATTGGAGCCAAGCTGGAAACAGGGAACCCGTATTACTGTTACATTGACGACAATACAGGTCAAGCGAACATCAAAAAATACAGCAGTTTGGAGAATGCAATTGTTGACGATGTAAAAATTCTTGGAAATGATGACGGCACTGGTTCACTTCAGAAAGCTGCCATTAAATTGAGAATACAGAGAAACCCAATCATTGGAGACAAGTTCTCAAGTCGGCATGGACAGAAAGGAATTTGTAGCCAGAAATGGCCGCTTGAAAATATGCCTTTTACAGAATCAGGGATGACACCGGATATCATCTTTAATCCTCACGGCTTCCCCTCGCGTATGACAATTGGTATGATGATAGAGAGTATGGCTGGAAAATCAGCCAGCATCAATGGAATAGCGTACGACGCTACACCGTTCACTTTCTCTGAAGATGATCCTGCTATCGATTACTTTGGAAACCTCTTAACAGAATCTGGCTACAACTACTACGGCACCGAACGAATGTACAGTGGTACTGACGGGCGTGAGTTTGAGGCAGACATCTTTTTTGGAGTTGTTTATTATCAACGACTGAGGCACATGGTAGCAGACAAGTATCAGGTTCGGACAACAGGCCCTATAGACATACTGACACATCAACCAGTCCAGGGTCGGAAAAAACAAGGAGGCATTCGGTTTGGTGAAATGGAAAGAGACGCACTTCTGGCTCATGGCACGTCTTTTCTATTGCAAGATCGGCTCATGAACTGCTCAGACAGAACAGTGGGTCAGGTGTGTACCAAGTGTGGCAGCATACTCTCCCCCCTACTGGACAAACCTGCCGTTGAGGTGGCAGCTGCGGCTGCGCACAGGGAGCGGAAGTGGACTTGCAAAACATGTGAAAGCAGCGAGCACATTCAACTGTTAGCTTTCCCTTACGTGTTCCGTTATCTTGTGGCTGAGTTGGCAGGGATGAATATAAAGACTTCTTTGGAAGTGAAAAGAGTTGGACAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H9Y6	DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens OX=9606 GN=POLR1B PE=1 SV=2
B8JKD7	DNA-directed RNA polymerase I subunit RPA2 OS=Danio rerio OX=7955 GN=polr1b PE=3 SV=1
Q5REE8	DNA-directed RNA polymerase I subunit RPA2 OS=Pongo abelii OX=9601 GN=POLR1B PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003279 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06883 all species →	RNA_pol_Rpa2_4	RNA polymerase I, Rpa2 specific domain	Domain	Interproscan
PF04560 all species →	RNA_pol_Rpb2_7	RNA polymerase Rpb2, domain 7	Domain	Interproscan
PF04565 all species →	RNA_pol_Rpb2_3	RNA polymerase Rpb2, domain 3	Domain	Interproscan
PF00562 all species →	RNA_pol_Rpb2_6	RNA polymerase Rpb2, domain 6	Domain	Interproscan
PF04561 all species →	RNA_pol_Rpb2_2	RNA polymerase Rpb2, domain 2	Domain	Interproscan
PF04563 all species →	RNA_pol_Rpb2_1	RNA polymerase beta subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014724 all species →	Homologous_superfamily	RNA polymerase Rpb2, OB-fold	Interproscan
IPR009674 all species →	Domain	DNA-directed RNA polymerase I subunit RPA2, domain 4	Interproscan
IPR007121 all species →	Conserved_site	RNA polymerase, beta subunit, conserved site	Interproscan
IPR007641 all species →	Domain	RNA polymerase Rpb2, domain 7	Interproscan
IPR007645 all species →	Domain	RNA polymerase Rpb2, domain 3	Interproscan
IPR007120 all species →	Domain	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain	Interproscan
IPR037034 all species →	Homologous_superfamily	RNA polymerase Rpb2, domain 2 superfamily	Interproscan
IPR007642 all species →	Domain	RNA polymerase Rpb2, domain 2	Interproscan
IPR015712 all species →	Family	DNA-directed RNA polymerase, subunit 2	Interproscan
IPR037033 all species →	Homologous_superfamily	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	Interproscan
IPR007644 all species →	Domain	RNA polymerase, beta subunit, protrusion	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20856 all species →	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0001054 all species →	Molecular Function	RNA polymerase I activity	Interproscan
GO:0005736 all species →	Cellular Component	RNA polymerase I complex	Interproscan
GO:0032549 all species →	Molecular Function	ribonucleoside binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03002	RPA2, POLR1B; DNA-directed RNA polymerase I subunit RPA2	EC:2.7.7.6	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.