Gene detail

Detailed information of evm.model.Ap7.2830 in Astrangia poculata

Genomic Location: Ap7:29860475...29874470
NR annotation: XP_020616295.1, zinc transporter ZIP14-like isoform X3 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap7.2830

atgcgttgccggaaactcattttacttctgtgtttgaatttctttttctgccgttttgcactttcgcatgaacttacgaaacagggccacgatcactacagttttaaaacgctacaagaagaagtgaatagcgactcgctcatgtctgatgatgctgagagacttctttccaagcttcacttctggaactgttccgacggaaatgaaagggtgaattaccgaaagtgcctttcgccgtcagatctctaccgttttgccggatcgtcgtcctcaaagcttctgaattccacagaattcgcgcaagtgagtccactgattgtttactgcctgttgccagcgcctgaaaagaacgccggtcgatgtgattattctcccaagaaccacagcgaacttttcaactcgttcgcaaggaatttcagtcaacatggcgatcagggaaatatcacacttgaagccctggatcacatcctggaggaggtcaacaaaaccattggcaaatttttaacacgaaagaagtgtttttccgctgaaagcatttttgaggaaattgaggaacaagaagaagaacatcacgaggaagaaggcgaacatcacgaggaagaaggagaacaccatggagaagaaggaaaagctctccatcaagaagactttgaaaaggcctgtgctagcattgtactacatctggtaaaaggattctgtattgaagatgcacacaagcacaatgggacagaggaatctcatctaccttcaaaagaattcttcatcaatgaccttttcaagaaaaagacacatctgtctgaaggagacctggaggagattgcagaagttcttggcatcggcaaagcggctgatgaatcatcgcataatcacaggcgtagaagatcagctgggtcagtcttgttgccacagcaaggattaggggcacctcatgctgttcatcgacgtgcagttgatgatcatgatcaccctcaaaccaatggtgcaagcggcagctgttactcactggatgacatgttgacagtttttgggattgaacactcagttggtgcagacatgtatgacttcaaggaactttgccctgcatttattcaacaatccaaaagtggagcttgcaaagaatcaaatgaaaataataataccacagacaaggacatggggaaaatttggggttatggtttcattgctgtaaccatcattagcatcacttctctcatgggtgttgccactattccatttgttggaaagaggatgtacaagaagatcctggccactttggttgcacttgctgttgggacacttgctggagacagtttacttcatctcttacctcatgcatttggtcttcatggacacgaagaagaaggtggagcacacgaacacgatgaagaagagaatggtttcatttggaaagcattagttgtgctggcttcaatttatgcattctttctgtttgaaactttgatgcatttgggtttgaagagcaagattggtgaccatggtggccacagtcacattgatgttgagcttcctggtccatctagtcgacatatgagcttcaagaagaaaagaagttgttctaagttagaacaccatgaaggttcccctcccattgcaaatggtgaagaaaaaccacccatggaaaatggggacattgttctgacaaatgtgaatgccaaaagtgacattgaagatggccttgctgtagttccacatgattcaacagtcaaaccaaagaaaactcttaaacagagcttgtctcgtcgctcagtcttcagtgacgaggaaagaccaaagaaaccccttagcaagatatcagccgtggcctggatgatcattataggcgacactcttcataacataagtgacggcttagccattggtgcagccttctcagaaggtggaacttctggtgtatcaggaggaattagtacatctattgctgtgttctgtcatgagttgcctcatgaacttggggattttgctgtgttacttacagccggcatgacagtgaagatggcattgcttgcaaacttactgtcagccatgtcttgttacattggtttagcgattggcattcttgttggtcaagaaggtgatgttcggttctggatctttgctatcgccgctggaatgtttctttatgtagcactggttgacatgcttcctgatctgatgcacagcgagactttgcagactgaaccagtgacgacgtttctgtgccaaaactttggtttactgcttggtatctgcatcatgttggttatagctttgtatgaagaggatttaatggatgtcaactggtga

Transcript

evm.model.Ap7.2830

ATGCGTTGCCGGAAACTCATTTTACTTCTGTGTTTGAATTTCTTTTTCTGCCGTTTTGCACTTTCGCATGAACTTACGAAACAGGGCCACGATCACTACAGTTTTAAAACGCTACAAGAAGAAGTGAATAGCGACTCGCTCATGTCTGATGATGCTGAGAGACTTCTTTCCAAGCTTCACTTCTGGAACTGTTCCGACGGAAATGAAAGGGTGAATTACCGAAAGTGCCTTTCGCCGTCAGATCTCTACCGTTTTGCCGGATCGTCGTCCTCAAAGCTTCTGAATTCCACAGAATTCGCGCAAGTGAGTCCACTGATTGTTTACTGCCTGTTGCCAGCGCCTGAAAAGAACGCCGGTCGATGTGATTATTCTCCCAAGAACCACAGCGAACTTTTCAACTCGTTCGCAAGGAATTTCAGTCAACATGGCGATCAGGGAAATATCACACTTGAAGCCCTGGATCACATCCTGGAGGAGGTCAACAAAACCATTGGCAAATTTTTAACACGAAAGAAGTGTTTTTCCGCTGAAAGCATTTTTGAGGAAATTGAGGAACAAGAAGAAGAACATCACGAGGAAGAAGGCGAACATCACGAGGAAGAAGGAGAACACCATGGAGAAGAAGGAAAAGCTCTCCATCAAGAAGACTTTGAAAAGGCCTGTGCTAGCATTGTACTACATCTGGTAAAAGGATTCTGTATTGAAGATGCACACAAGCACAATGGGACAGAGGAATCTCATCTACCTTCAAAAGAATTCTTCATCAATGACCTTTTCAAGAAAAAGACACATCTGTCTGAAGGAGACCTGGAGGAGATTGCAGAAGTTCTTGGCATCGGCAAAGCGGCTGATGAATCATCGCATAATCACAGGCGTAGAAGATCAGCTGGGTCAGTCTTGTTGCCACAGCAAGGATTAGGGGCACCTCATGCTGTTCATCGACGTGCAGTTGATGATCATGATCACCCTCAAACCAATGGTGCAAGCGGCAGCTGTTACTCACTGGATGACATGTTGACAGTTTTTGGGATTGAACACTCAGTTGGTGCAGACATGTATGACTTCAAGGAACTTTGCCCTGCATTTATTCAACAATCCAAAAGTGGAGCTTGCAAAGAATCAAATGAAAATAATAATACCACAGACAAGGACATGGGGAAAATTTGGGGTTATGGTTTCATTGCTGTAACCATCATTAGCATCACTTCTCTCATGGGTGTTGCCACTATTCCATTTGTTGGAAAGAGGATGTACAAGAAGATCCTGGCCACTTTGGTTGCACTTGCTGTTGGGACACTTGCTGGAGACAGTTTACTTCATCTCTTACCTCATGCATTTGGTCTTCATGGACACGAAGAAGAAGGTGGAGCACACGAACACGATGAAGAAGAGAATGGTTTCATTTGGAAAGCATTAGTTGTGCTGGCTTCAATTTATGCATTCTTTCTGTTTGAAACTTTGATGCATTTGGGTTTGAAGAGCAAGATTGGTGACCATGGTGGCCACAGTCACATTGATGTTGAGCTTCCTGGTCCATCTAGTCGACATATGAGCTTCAAGAAGAAAAGAAGTTGTTCTAAGTTAGAACACCATGAAGGTTCCCCTCCCATTGCAAATGGTGAAGAAAAACCACCCATGGAAAATGGGGACATTGTTCTGACAAATGTGAATGCCAAAAGTGACATTGAAGATGGCCTTGCTGTAGTTCCACATGATTCAACAGTCAAACCAAAGAAAACTCTTAAACAGAGCTTGTCTCGTCGCTCAGTCTTCAGTGACGAGGAAAGACCAAAGAAACCCCTTAGCAAGATATCAGCCGTGGCCTGGATGATCATTATAGGCGACACTCTTCATAACATAAGTGACGGCTTAGCCATTGGTGCAGCCTTCTCAGAAGGTGGAACTTCTGGTGTATCAGGAGGAATTAGTACATCTATTGCTGTGTTCTGTCATGAGTTGCCTCATGAACTTGGGGATTTTGCTGTGTTACTTACAGCCGGCATGACAGTGAAGATGGCATTGCTTGCAAACTTACTGTCAGCCATGTCTTGTTACATTGGTTTAGCGATTGGCATTCTTGTTGGTCAAGAAGGTGATGTTCGGTTCTGGATCTTTGCTATCGCCGCTGGAATGTTTCTTTATGTAGCACTGGTTGACATGCTTCCTGATCTGATGCACAGCGAGACTTTGCAGACTGAACCAGTGACGACGTTTCTGTGCCAAAACTTTGGTTTACTGCTTGGTATCTGCATCATGTTGGTTATAGCTTTGTATGAAGAGGATTTAATGGATGTCAACTGGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P5F6	Zinc transporter ZIP10 OS=Mus musculus OX=10090 GN=Slc39a10 PE=1 SV=1
Q6PEH9	Zinc transporter ZIP10 OS=Danio rerio OX=7955 GN=slc39a10 PE=2 SV=2
Q9ULF5	Zinc transporter ZIP10 OS=Homo sapiens OX=9606 GN=SLC39A10 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000436 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18292 all species →	ZIP4_domain	Zinc transporter ZIP4 domain	Domain	Interproscan
PF02535 all species →	Zip	ZIP Zinc transporter	Family	Interproscan
PF21116 all species →	EF-hand_Zip	Zip protein EF-hand	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041137 all species →	Domain	Zinc transporter ZIP4, N-terminal	Interproscan
IPR003689 all species →	Family	Zinc/iron permease	Interproscan
IPR049406 all species →	Domain	Zinc transporter ZIP4/12, EF-hand	Interproscan
IPR050799 all species →	Family	Zinc Iron Protein (ZIP) Transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12191 all species →	SOLUTE CARRIER FAMILY 39	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030001 all species →	Biological Process	metal ion transport	Interproscan
GO:0046873 all species →	Molecular Function	metal ion transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005385 all species →	Molecular Function	zinc ion transmembrane transporter activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006875 all species →	Biological Process	obsolete intracellular metal ion homeostasis	Interproscan
GO:0071578 all species →	Biological Process	zinc ion import across plasma membrane	Interproscan
GO:0140410 all species →	Molecular Function	monoatomic cation:bicarbonate symporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14716	SLC39A10, ZIP10; solute carrier family 39 (zinc transporter), member 10	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.