Gene detail

Detailed information of evm.model.Ap7.287 in Astrangia poculata

Genomic Location: Ap7:3484722...3493973
NR annotation: CAH3130749.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZVY5	Citrate synthase, mitochondrial OS=Danio rerio OX=7955 GN=cs PE=2 SV=1
Q17GM7	Probable citrate synthase 1, mitochondrial OS=Aedes aegypti OX=7159 GN=AAEL002956 PE=3 SV=1
Q6S9V6	Citrate synthase, mitochondrial OS=Xiphias gladius OX=8245 GN=cs PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004333 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00285 all species →	Citrate_synt	Citrate synthase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002020 all species →	Family	Citrate synthase	Interproscan
IPR016142 all species →	Homologous_superfamily	Citrate synthase-like, large alpha subdomain	Interproscan
IPR016143 all species →	Homologous_superfamily	Citrate synthase-like, small alpha subdomain	Interproscan
IPR036969 all species →	Homologous_superfamily	Citrate synthase superfamily	Interproscan
IPR019810 all species →	Active_site	Citrate synthase active site	Interproscan
IPR010109 all species →	Family	Citrate synthase, eukaryotic-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11739 all species →	CITRATE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046912 all species →	Molecular Function	acyltransferase activity, acyl groups converted into alkyl on transfer	Interproscan
GO:0004108 all species →	Molecular Function	citrate (Si)-synthase activity	Interproscan
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0006101 all species →	Biological Process	citrate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01647	CS, gltA; citrate synthase	EC:2.3.3.1	Glyoxylate and dicarboxylate metabolism	ko00630	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.