Gene detail

Detailed information of evm.model.Ap7.2908 in Astrangia poculata

Genomic Location: Ap7:30730686...30731829
NR annotation: KAJ7391904.1, Single-strand selective monofunctional uracil DNA glycosylase [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9YGN6	Single-strand selective monofunctional uracil DNA glycosylase OS=Xenopus laevis OX=8355 GN=smug1 PE=1 SV=1
Q53HV7	Single-strand selective monofunctional uracil DNA glycosylase OS=Homo sapiens OX=9606 GN=SMUG1 PE=1 SV=2
Q811Q1	Single-strand selective monofunctional uracil-DNA glycosylase OS=Rattus norvegicus OX=10116 GN=Smug1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010546 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03167 all species →	UDG	Uracil DNA glycosylase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039134 all species →	Family	Single-strand selective monofunctional uracil DNA glycosylase	Interproscan
IPR036895 all species →	Homologous_superfamily	Uracil-DNA glycosylase-like domain superfamily	Interproscan
IPR005122 all species →	Domain	Uracil-DNA glycosylase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13235 all species →	SINGLE-STRAND SELECTIVE MONOFUNCTIONAL URACIL DNA GLYCOSYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000703 all species →	Molecular Function	oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity	Interproscan
GO:0004844 all species →	Molecular Function	uracil DNA N-glycosylase activity	Interproscan
GO:0006284 all species →	Biological Process	base-excision repair	Interproscan
GO:0017065 all species →	Molecular Function	single-strand selective uracil DNA N-glycosylase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10800	SMUG1; single-strand selective monofunctional uracil DNA glycosylase	EC:3.2.2.-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.