Gene detail

Detailed information of evm.model.Ap7.359 in Astrangia poculata

Genomic Location: Ap7:4288372...4310108
NR annotation: XP_020613651.1, ATP-citrate synthase-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap7.359

atgtcggcgaaagctatctacgaaactgacggcaagtcacttcttgccaaatggttccaaaacacttgctacgtaaagaacaaatttgccgtaattgcacatgacacaaattgggacgagattgttcaggaaaatccatggattgcaagcgagaaacttgttgttaaaccagatcagcttataaagcgccgaggcaagctgggtctcattaaggttaatgtcaatttacaagaagctaagaaatggatcgaggagagaatgggcaaggatattcaggttggagctgcaagtggaccactaaaaagattcataattgaaccatttgttccacaccagcagaatgaagaattttatgtgtgcatttatgcccaacgagactgtgacacaattttattccatcacgagggtggggtggagattggagatgtcgacagcaaggctgttaaactagaagttggccttgaagacaaagttacagttgaattggtcgagaaaaaactcatgcaaaatgttccacaacagaagaaaaaattgcttgccacatttatccacgacctgtttcaactttatactgatctgtacttcacttacctggaaataaatccccttgtggttgttggtgagtcagtccatgttcttgatcttgctgccaagttggatcagaccgcagagtttatttgtaaaacaaaatggggtgatgttgacttcccacctccatttggtagagaggcttatcccgaggaagcatacattgctgaattagatgcaaagagtggagcatctctaaaactgacaatcctgaacagcaaaggtcgtatatggaccatggtggctggaggaggagcatctgttgtgtacagtgacactgtatgtgacttgggcggggcttctgagctagcaaattatggcgagtactctggtgctccatcagaatcacagacttacgaatacgccaagacagttctcaagctcatgacagagggtccaccaagacctgatgggaagatccttatcattggtggaggaattgcaaacttcaccaatgtgtcagcaacattcaagggcatagtaaaagctcttcaggaatatcagaagaagctcttggaacacaaggttgatatatatgtacgaagaggagggccaaactaccaagaaggtctccgagtcatgagagaagtgggttccagtttaggcctgaacatgcacgtttttggaacagaaactcacatgacggctattgttggcatggcgctgggtaaaagagagattcccaaacaagttggcttcgactcaaatgcggcagcaaacatgttctttacagctcaggacaaaggttcttctgcaactggtggtaaaaagacagtgtacatgtcagaaaacacaaagaaaacatcagacgataaaccgtcaccagaaccaagccgcaaggctgcaggaggaaagaaggcgcctctatttaccagcgagacaaggacgatcatctggggcttacaagcgcgagctgttcagggcatgctggattttgactatgtgtgtgagagaaagagaccgtcagtggccgctatggtctaccctttcagtggaaatcaccgtcaaaagttttactatggacacaaagagatcatgattccagtgtacaaagagatgtccgaagcaatgaacaaacaccatgatgccgatgtcatgatcaacttcgcatcgcttcgctcagcttatgatgctactcttgaagccatgcagttttcacaaattcgcacaatcgccatcatcgctgaaggaattcctgaagccaagaccagacaactaaaccggaaagctaaagaaatgggagtgactattatcggcccagcaactgttggaggtatcaagcctggatgtttcaagatcggtaacactggtggcatgttggacaacattttggcgtcaaaactctatcgaccaggaagcgttgcctacgtgtctcgatctggcggcatgtccaatgaactcaacaacatcatctctcggacaactgatggcgtgtatgagggcgtggctattggcggtgacaggtatcctggtacaacgttcatggatcacgtgatgagatatcaagaaaaccctgatgtcaaaatgatcgtggtccttggagaggttggtggtactgaggaatacaagatttgcgaggccattaagagcggcaaggtaaccaagcctgtcgtggtatggtgcattgggacatgcgcaggaatgttcacgtcagaggtgcagttcggtcacgctggagcaagtgctcatggagaaaacgaaacagcggtcgccaagaacgaagctttgaaagaggccggtgcttatgttccagacagtttcgattctctgtttgatatgatcaaggaagtttatgacgttttagttaaagatgggacgattgttcccaaagcggagaagaatccacccactgttcctatggattactcttgggctcaggagcttggtttgatccgcaaaccgtcttcgtttatgtcaagtatctgtgacgagagaggagcggaattgttgtacgctggtatgcccattacagaggtgtttaaggaaaacattggtgttggaggagttctgggtctgctgtggttccagagaaaattacctgcatacgctagtgaatttattgaaatgtgcctcatgataaccgctgaccacggcccagctgtttcaggtgctcataacacaatcgtcacagctagagctggcaaggaccttatatcttctttggtgtctggtctcctcacaatcggtgacagattcggtggggcattagacgcggctgctcgggtgttctcccatggtgtagacagtggacaggcgcccatggaattcgtcaatgacatgagaaagaaaggacagctcatcatgggaattgggcatcgagtcaaatctctaaacaatcccgacatgcgtgtggtgcttctgaaggactttgtgaagaagcattttcctgccaccccagttatggactacgccattgaagtcgagaagatcacaacatctaagaaaccaaatcttatcctcaatgtagacggttgtattggcgccgcttttgtagacctactgcgtcactgtggagctttcacaagagaggaagctgacgaatttgtgcagattgggtctcttaacggattgtttgtgttaggaagatcgatcgggttcattggtcattacttggatcagaagcgtttaaagatgggcttgtacagacatccgtgggacgacatcacctacatcatgcccgaccatctcaacgatctccgcccggccagctttgaatag

Transcript

evm.model.Ap7.359

ATGTCGGCGAAAGCTATCTACGAAACTGACGGCAAGTCACTTCTTGCCAAATGGTTCCAAAACACTTGCTACGTAAAGAACAAATTTGCCGTAATTGCACATGACACAAATTGGGACGAGATTGTTCAGGAAAATCCATGGATTGCAAGCGAGAAACTTGTTGTTAAACCAGATCAGCTTATAAAGCGCCGAGGCAAGCTGGGTCTCATTAAGGTTAATGTCAATTTACAAGAAGCTAAGAAATGGATCGAGGAGAGAATGGGCAAGGATATTCAGGTTGGAGCTGCAAGTGGACCACTAAAAAGATTCATAATTGAACCATTTGTTCCACACCAGCAGAATGAAGAATTTTATGTGTGCATTTATGCCCAACGAGACTGTGACACAATTTTATTCCATCACGAGGGTGGGGTGGAGATTGGAGATGTCGACAGCAAGGCTGTTAAACTAGAAGTTGGCCTTGAAGACAAAGTTACAGTTGAATTGGTCGAGAAAAAACTCATGCAAAATGTTCCACAACAGAAGAAAAAATTGCTTGCCACATTTATCCACGACCTGTTTCAACTTTATACTGATCTGTACTTCACTTACCTGGAAATAAATCCCCTTGTGGTTGTTGGTGAGTCAGTCCATGTTCTTGATCTTGCTGCCAAGTTGGATCAGACCGCAGAGTTTATTTGTAAAACAAAATGGGGTGATGTTGACTTCCCACCTCCATTTGGTAGAGAGGCTTATCCCGAGGAAGCATACATTGCTGAATTAGATGCAAAGAGTGGAGCATCTCTAAAACTGACAATCCTGAACAGCAAAGGTCGTATATGGACCATGGTGGCTGGAGGAGGAGCATCTGTTGTGTACAGTGACACTGTATGTGACTTGGGCGGGGCTTCTGAGCTAGCAAATTATGGCGAGTACTCTGGTGCTCCATCAGAATCACAGACTTACGAATACGCCAAGACAGTTCTCAAGCTCATGACAGAGGGTCCACCAAGACCTGATGGGAAGATCCTTATCATTGGTGGAGGAATTGCAAACTTCACCAATGTGTCAGCAACATTCAAGGGCATAGTAAAAGCTCTTCAGGAATATCAGAAGAAGCTCTTGGAACACAAGGTTGATATATATGTACGAAGAGGAGGGCCAAACTACCAAGAAGGTCTCCGAGTCATGAGAGAAGTGGGTTCCAGTTTAGGCCTGAACATGCACGTTTTTGGAACAGAAACTCACATGACGGCTATTGTTGGCATGGCGCTGGGTAAAAGAGAGATTCCCAAACAAGTTGGCTTCGACTCAAATGCGGCAGCAAACATGTTCTTTACAGCTCAGGACAAAGGTTCTTCTGCAACTGGTGGTAAAAAGACAGTGTACATGTCAGAAAACACAAAGAAAACATCAGACGATAAACCGTCACCAGAACCAAGCCGCAAGGCTGCAGGAGGAAAGAAGGCGCCTCTATTTACCAGCGAGACAAGGACGATCATCTGGGGCTTACAAGCGCGAGCTGTTCAGGGCATGCTGGATTTTGACTATGTGTGTGAGAGAAAGAGACCGTCAGTGGCCGCTATGGTCTACCCTTTCAGTGGAAATCACCGTCAAAAGTTTTACTATGGACACAAAGAGATCATGATTCCAGTGTACAAAGAGATGTCCGAAGCAATGAACAAACACCATGATGCCGATGTCATGATCAACTTCGCATCGCTTCGCTCAGCTTATGATGCTACTCTTGAAGCCATGCAGTTTTCACAAATTCGCACAATCGCCATCATCGCTGAAGGAATTCCTGAAGCCAAGACCAGACAACTAAACCGGAAAGCTAAAGAAATGGGAGTGACTATTATCGGCCCAGCAACTGTTGGAGGTATCAAGCCTGGATGTTTCAAGATCGGTAACACTGGTGGCATGTTGGACAACATTTTGGCGTCAAAACTCTATCGACCAGGAAGCGTTGCCTACGTGTCTCGATCTGGCGGCATGTCCAATGAACTCAACAACATCATCTCTCGGACAACTGATGGCGTGTATGAGGGCGTGGCTATTGGCGGTGACAGGTATCCTGGTACAACGTTCATGGATCACGTGATGAGATATCAAGAAAACCCTGATGTCAAAATGATCGTGGTCCTTGGAGAGGTTGGTGGTACTGAGGAATACAAGATTTGCGAGGCCATTAAGAGCGGCAAGGTAACCAAGCCTGTCGTGGTATGGTGCATTGGGACATGCGCAGGAATGTTCACGTCAGAGGTGCAGTTCGGTCACGCTGGAGCAAGTGCTCATGGAGAAAACGAAACAGCGGTCGCCAAGAACGAAGCTTTGAAAGAGGCCGGTGCTTATGTTCCAGACAGTTTCGATTCTCTGTTTGATATGATCAAGGAAGTTTATGACGTTTTAGTTAAAGATGGGACGATTGTTCCCAAAGCGGAGAAGAATCCACCCACTGTTCCTATGGATTACTCTTGGGCTCAGGAGCTTGGTTTGATCCGCAAACCGTCTTCGTTTATGTCAAGTATCTGTGACGAGAGAGGAGCGGAATTGTTGTACGCTGGTATGCCCATTACAGAGGTGTTTAAGGAAAACATTGGTGTTGGAGGAGTTCTGGGTCTGCTGTGGTTCCAGAGAAAATTACCTGCATACGCTAGTGAATTTATTGAAATGTGCCTCATGATAACCGCTGACCACGGCCCAGCTGTTTCAGGTGCTCATAACACAATCGTCACAGCTAGAGCTGGCAAGGACCTTATATCTTCTTTGGTGTCTGGTCTCCTCACAATCGGTGACAGATTCGGTGGGGCATTAGACGCGGCTGCTCGGGTGTTCTCCCATGGTGTAGACAGTGGACAGGCGCCCATGGAATTCGTCAATGACATGAGAAAGAAAGGACAGCTCATCATGGGAATTGGGCATCGAGTCAAATCTCTAAACAATCCCGACATGCGTGTGGTGCTTCTGAAGGACTTTGTGAAGAAGCATTTTCCTGCCACCCCAGTTATGGACTACGCCATTGAAGTCGAGAAGATCACAACATCTAAGAAACCAAATCTTATCCTCAATGTAGACGGTTGTATTGGCGCCGCTTTTGTAGACCTACTGCGTCACTGTGGAGCTTTCACAAGAGAGGAAGCTGACGAATTTGTGCAGATTGGGTCTCTTAACGGATTGTTTGTGTTAGGAAGATCGATCGGGTTCATTGGTCATTACTTGGATCAGAAGCGTTTAAAGATGGGCTTGTACAGACATCCGTGGGACGACATCACCTACATCATGCCCGACCATCTCAACGATCTCCGCCCGGCCAGCTTTGAATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32PF2	ATP-citrate synthase OS=Bos taurus OX=9913 GN=ACLY PE=2 SV=1
Q2TCH3	ATP-citrate synthase OS=Ovis aries OX=9940 GN=ACLY PE=2 SV=1
Q91V92	ATP-citrate synthase OS=Mus musculus OX=10090 GN=Acly PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005064 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08442 all species →	ATP-grasp_2	ATP-grasp domain	Domain	Interproscan
PF00549 all species →	Ligase_CoA	CoA-ligase	Domain	Interproscan
PF00285 all species →	Citrate_synt	Citrate synthase, C-terminal domain	Domain	Interproscan
PF16114 all species →	Citrate_bind	ATP citrate lyase citrate-binding	Domain	Interproscan
PF02629 all species →	CoA_binding	CoA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017440 all species →	Active_site	ATP-citrate lyase/succinyl-CoA ligase, active site	Interproscan
IPR016102 all species →	Homologous_superfamily	Succinyl-CoA synthetase-like	Interproscan
IPR014608 all species →	Family	ATP-citrate synthase	Interproscan
IPR036969 all species →	Homologous_superfamily	Citrate synthase superfamily	Interproscan
IPR033847 all species →	Conserved_site	ATP-citrate lyase/succinyl-CoA ligase, conserved site	Interproscan
IPR003781 all species →	Domain	CoA-binding	Interproscan
IPR013650 all species →	Domain	ATP-grasp fold, succinyl-CoA synthetase-type	Interproscan
IPR005811 all species →	Domain	ATP-citrate synthase/succinyl-CoA ligase, C-terminal domain	Interproscan
IPR002020 all species →	Family	Citrate synthase	Interproscan
IPR032263 all species →	Domain	ATP-citrate synthase, citrate-binding domain	Interproscan
IPR016143 all species →	Homologous_superfamily	Citrate synthase-like, small alpha subdomain	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR017866 all species →	Conserved_site	Succinyl-CoA synthetase, beta subunit, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23118 all species →	ATP-CITRATE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003878 all species →	Molecular Function	ATP citrate synthase activity	Interproscan
GO:0006085 all species →	Biological Process	acetyl-CoA biosynthetic process	Interproscan
GO:0006101 all species →	Biological Process	citrate metabolic process	Interproscan
GO:0046912 all species →	Molecular Function	acyltransferase activity, acyl groups converted into alkyl on transfer	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006633 all species →	Biological Process	fatty acid biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01648	ACLY; ATP citrate (pro-S)-lyase	EC:2.3.3.8	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.