Gene detail

Detailed information of evm.model.Ap7.408 in Astrangia poculata

Genomic Location: Ap7:4794342...4806294
NR annotation: XP_020623227.1, mucin-5AC-like isoform X3 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap7.408

atgttgctgcgtgcttctggtttgtcgaaccgattaacaccagataatttcttcaaagcctcgtcgtcagtcgacttttactatcgaccaggagagggacgactgaacaattcacacgtagaaggacggggaagtggcgcttggtgttctgcagcgcaagacaaagcaccatatttggaagtctatctgggatctaatcgtgaagtaaccgccatatctacacagggacacccagttcttcacaagtgggtgaccctgttccgattggcatacagctcgaatggagttacctggattaagatcaacgagacgtttcacggtaatacgaaccactcaaccattgcaactaacaagttgtcacagccattcgacgctcagtacatcagggtgtacgcagagcagtggtatatcggtgtgtgcctgcgtgtggagttttacggttgcccagttgtggttttcttaccaactcccacgacgacgccgactgtgtgtccagatttcagctgtgacaatggcaagtgcataagtcgaagcctgctgtgtgatggagatgatgattgcggtgataatacggatgaaatgctttgcaacgaaacgtgcaaggaattccgttgtaaaaacaacagcaagtgtatatctttcaagaccacatactgtcacaagtgctgtcatgacaacgaaaacatcgctcaacatgtcaaccacacaagaaacaacaaagatgacctcaccaaagagccaatccactgcaaacgtttacacaaccgaagcgacgacttcgcgagtgacaacgaagatgatgtcatcttcgggtacggagagcacaacaatgacgtcgccgacatcggaaacgcaaacgctgcatactcgggtcacgacaaaattgcctttaccaacgacaaaagaggctatcggagttgttacaccagcaacaccaacaagtggcacaacagcagcaacaaatatttcgaagggcgtagggggatactgatcagtgtattggacgccggattcagtccagtttgccgagatgaatgcacctgttttatgaactgtgctggaaacatcatctgcccattcagtggactgtgttcaaactgcaactgcagcaatggaacattgatgcgcgcaagtcgatgtgttgtacccatgcctccgccatgcgtggagtgtgattacaaaggacaaaaatttcaggttggtacagctatccaggacggaccatgtcacacttgtacgtgtgagcggaagccttacacccttgaccaagcacaaatgatttgtcagcttacgtgctcgcagccatcaacgacatccacaacaatgtcaacaacaacaacgtcaaagatagctagctcaacagcaaccacatccacacaagagcccacaacaacgtcaaaggtaacaagtccaacaacaacgaaatccacagaagagtcaacaacaacatcaaagataacgccaagtccgacaattacgtcatccaaacaagggtcttcaacaacattacaggttattatcctatcagtcttaaaagaaacgataccaggtcaatctgatcaaaaactgacatcaactacatccatacaagagtccaaaacagcatcaacgataactattcaaataacaccgacatccacaacaatgtcaacaacaacaacgtcaaagatagcaagtccgacaacaacaacatccaaacaagagtcgacaacaacattaaagataacaattccaacaacaacgacacccacaaaagagtcgacaacaacatcaaagatagcaagtccgacaacaacaacatccacagaagagtcgacaacaacatcaaagataacaagtccaacaacaacgacatccacaaaagagtcgacaacaacatcaaagataacaccaagtccgacaacaacgacattcacaaaagagtcgacaacaacatcaaagataacaagtccgacaacaacgacatccacaaaagagtccacaacaacatcaaagataacaagtccaacaacaacaacatccacaaaagagtcgacaacaacatcaaagataacaagtccaacaacaacgacatccacaaaagagtcgacaacaacatcaaagataacaagtccgacaacaacgacatccataaatgagtcgacaacaacatcaaagataacaagtccgacaacaacaacatccacaaaagagtcgacaacaacatcaaagataacaagtccgacaacaacgacatccacaaaagagtcgacaacaacatcaaagataacaagtccgacaacaacaacatccacaaaagagtcgacaacaacatcaaagataacaagtccgacaacaacgacatccacaaaagagtcgacaacaacatcaaagataacaagtccgacaacaacgacatccacaaaagagtcgacaacaacatcaaagataacaagtccgacaacaacgacatccacaaaagagtcgacaacaacatcaaagatagcaagtccgacaacaacaacatccacaaaagagtcgacaacaacatcaaagataacaagtccaacaacaacaacatccacaaaagagtcgacaacaacatcaaagataacaagtccaacaacaacgacatccaaacaagagtccacaacaacatcaaagataacaagtccgacaacaacgacatccacaaaagagtcaacaacaacaacatcaaagataacgagtccaacaccaacgacattcactctaaaggttacaactcccacatcaggtcctttaggtcctggatgtgtatggagtaactgttcttgcaccaagacatgcgcagacctcgccgaacatgaaacagcaagctgcacggaggagacctgtaaacccggctgctcctgcccacccggcttggttttacacaacaacaaatgtgtctcgcctgtcctggagtgcccgtgttatcataatcaaacgttttacaagaccggccaaacgtttgaaaatggcacgtgcagttcgtgcttgtgtcttggtgattccgttaggtgcacgcagacgtgtaacatcaagtcctgtccaccgggtgaggagctacttgacgatcctgccaaatgttgcttttgtcgcaaaatatcaactgtgacagtttcttcgacaactcctgcgacaatgggaagagtatcagtcagtccgatgaagaacttgacaacagttatcaccaagacaaccacgtcttccgtctcaacactcaggaaaacagtcacgcctaaagcaacggcctccactgcaaaacaaccaacaccagccctagagacaagcacaagatttgtacaaactacttctcaacccaccgcgacgataaagccaaacgtgtccacacaagcagcaacgtcgtcggaaaaaccaacgacagaagttcaaatagagcgatgcaacgttcgcacagaaaacaaaagcatcattgacgagtttggctgttctaacacccagccaattcgtcaaacgtcttgccagggttcttgtaactcaaatgcagtcgtaaatattacttcgccatgggtccacgtcgagtgtttctgttgcaagcccaagagtcttagcggcgcgagcgtgccaatgacatgcccggagggtggtgtaaaggtgttcaactatcttgttataaccgaatgcagctgtgaatcttgtgaaagccatgaatacgaggctaaaataagggctgtactgggcaccatgtttgggaataccactaaggtggcagatgaggaaattttgcattag

Transcript

evm.model.Ap7.408

ATGTTGCTGCGTGCTTCTGGTTTGTCGAACCGATTAACACCAGATAATTTCTTCAAAGCCTCGTCGTCAGTCGACTTTTACTATCGACCAGGAGAGGGACGACTGAACAATTCACACGTAGAAGGACGGGGAAGTGGCGCTTGGTGTTCTGCAGCGCAAGACAAAGCACCATATTTGGAAGTCTATCTGGGATCTAATCGTGAAGTAACCGCCATATCTACACAGGGACACCCAGTTCTTCACAAGTGGGTGACCCTGTTCCGATTGGCATACAGCTCGAATGGAGTTACCTGGATTAAGATCAACGAGACGTTTCACGGTAATACGAACCACTCAACCATTGCAACTAACAAGTTGTCACAGCCATTCGACGCTCAGTACATCAGGGTGTACGCAGAGCAGTGGTATATCGGTGTGTGCCTGCGTGTGGAGTTTTACGGTTGCCCAGTTGTGGTTTTCTTACCAACTCCCACGACGACGCCGACTGTGTGTCCAGATTTCAGCTGTGACAATGGCAAGTGCATAAGTCGAAGCCTGCTGTGTGATGGAGATGATGATTGCGGTGATAATACGGATGAAATGCTTTGCAACGAAACGTGCAAGGAATTCCGTTGTAAAAACAACAGCAAGTGTATATCTTTCAAGACCACATACTGTCACAAGTGCTGTCATGACAACGAAAACATCGCTCAACATGTCAACCACACAAGAAACAACAAAGATGACCTCACCAAAGAGCCAATCCACTGCAAACGTTTACACAACCGAAGCGACGACTTCGCGAGTGACAACGAAGATGATGTCATCTTCGGGTACGGAGAGCACAACAATGACGTCGCCGACATCGGAAACGCAAACGCTGCATACTCGGGTCACGACAAAATTGCCTTTACCAACGACAAAAGAGGCTATCGGAGTTGTTACACCAGCAACACCAACAAGTGGCACAACAGCAGCAACAAATATTTCGAAGGGCGTAGGGGGATACTGATCAGTGTATTGGACGCCGGATTCAGTCCAGTTTGCCGAGATGAATGCACCTGTTTTATGAACTGTGCTGGAAACATCATCTGCCCATTCAGTGGACTGTGTTCAAACTGCAACTGCAGCAATGGAACATTGATGCGCGCAAGTCGATGTGTTGTACCCATGCCTCCGCCATGCGTGGAGTGTGATTACAAAGGACAAAAATTTCAGGTTGGTACAGCTATCCAGGACGGACCATGTCACACTTGTACGTGTGAGCGGAAGCCTTACACCCTTGACCAAGCACAAATGATTTGTCAGCTTACGTGCTCGCAGCCATCAACGACATCCACAACAATGTCAACAACAACAACGTCAAAGATAGCTAGCTCAACAGCAACCACATCCACACAAGAGCCCACAACAACGTCAAAGGTAACAAGTCCAACAACAACGAAATCCACAGAAGAGTCAACAACAACATCAAAGATAACGCCAAGTCCGACAATTACGTCATCCAAACAAGGGTCTTCAACAACATTACAGGTTATTATCCTATCAGTCTTAAAAGAAACGATACCAGGTCAATCTGATCAAAAACTGACATCAACTACATCCATACAAGAGTCCAAAACAGCATCAACGATAACTATTCAAATAACACCGACATCCACAACAATGTCAACAACAACAACGTCAAAGATAGCAAGTCCGACAACAACAACATCCAAACAAGAGTCGACAACAACATTAAAGATAACAATTCCAACAACAACGACACCCACAAAAGAGTCGACAACAACATCAAAGATAGCAAGTCCGACAACAACAACATCCACAGAAGAGTCGACAACAACATCAAAGATAACAAGTCCAACAACAACGACATCCACAAAAGAGTCGACAACAACATCAAAGATAACACCAAGTCCGACAACAACGACATTCACAAAAGAGTCGACAACAACATCAAAGATAACAAGTCCGACAACAACGACATCCACAAAAGAGTCCACAACAACATCAAAGATAACAAGTCCAACAACAACAACATCCACAAAAGAGTCGACAACAACATCAAAGATAACAAGTCCAACAACAACGACATCCACAAAAGAGTCGACAACAACATCAAAGATAACAAGTCCGACAACAACGACATCCATAAATGAGTCGACAACAACATCAAAGATAACAAGTCCGACAACAACAACATCCACAAAAGAGTCGACAACAACATCAAAGATAACAAGTCCGACAACAACGACATCCACAAAAGAGTCGACAACAACATCAAAGATAACAAGTCCGACAACAACAACATCCACAAAAGAGTCGACAACAACATCAAAGATAACAAGTCCGACAACAACGACATCCACAAAAGAGTCGACAACAACATCAAAGATAACAAGTCCGACAACAACGACATCCACAAAAGAGTCGACAACAACATCAAAGATAACAAGTCCGACAACAACGACATCCACAAAAGAGTCGACAACAACATCAAAGATAGCAAGTCCGACAACAACAACATCCACAAAAGAGTCGACAACAACATCAAAGATAACAAGTCCAACAACAACAACATCCACAAAAGAGTCGACAACAACATCAAAGATAACAAGTCCAACAACAACGACATCCAAACAAGAGTCCACAACAACATCAAAGATAACAAGTCCGACAACAACGACATCCACAAAAGAGTCAACAACAACAACATCAAAGATAACGAGTCCAACACCAACGACATTCACTCTAAAGGTTACAACTCCCACATCAGGTCCTTTAGGTCCTGGATGTGTATGGAGTAACTGTTCTTGCACCAAGACATGCGCAGACCTCGCCGAACATGAAACAGCAAGCTGCACGGAGGAGACCTGTAAACCCGGCTGCTCCTGCCCACCCGGCTTGGTTTTACACAACAACAAATGTGTCTCGCCTGTCCTGGAGTGCCCGTGTTATCATAATCAAACGTTTTACAAGACCGGCCAAACGTTTGAAAATGGCACGTGCAGTTCGTGCTTGTGTCTTGGTGATTCCGTTAGGTGCACGCAGACGTGTAACATCAAGTCCTGTCCACCGGGTGAGGAGCTACTTGACGATCCTGCCAAATGTTGCTTTTGTCGCAAAATATCAACTGTGACAGTTTCTTCGACAACTCCTGCGACAATGGGAAGAGTATCAGTCAGTCCGATGAAGAACTTGACAACAGTTATCACCAAGACAACCACGTCTTCCGTCTCAACACTCAGGAAAACAGTCACGCCTAAAGCAACGGCCTCCACTGCAAAACAACCAACACCAGCCCTAGAGACAAGCACAAGATTTGTACAAACTACTTCTCAACCCACCGCGACGATAAAGCCAAACGTGTCCACACAAGCAGCAACGTCGTCGGAAAAACCAACGACAGAAGTTCAAATAGAGCGATGCAACGTTCGCACAGAAAACAAAAGCATCATTGACGAGTTTGGCTGTTCTAACACCCAGCCAATTCGTCAAACGTCTTGCCAGGGTTCTTGTAACTCAAATGCAGTCGTAAATATTACTTCGCCATGGGTCCACGTCGAGTGTTTCTGTTGCAAGCCCAAGAGTCTTAGCGGCGCGAGCGTGCCAATGACATGCCCGGAGGGTGGTGTAAAGGTGTTCAACTATCTTGTTATAACCGAATGCAGCTGTGAATCTTGTGAAAGCCATGAATACGAGGCTAAAATAAGGGCTGTACTGGGCACCATGTTTGGGAATACCACTAAGGTGGCAGATGAGGAAATTTTGCATTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P21956	Lactadherin OS=Mus musculus OX=10090 GN=Mfge8 PE=1 SV=3
Q08431	Lactadherin OS=Homo sapiens OX=9606 GN=MFGE8 PE=1 SV=3
A2VEC9	SCO-spondin OS=Homo sapiens OX=9606 GN=SSPOP PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000873 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00057 all species →	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan
PF01826 all species →	TIL	Trypsin Inhibitor like cysteine rich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002172 all species →	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR036055 all species →	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR001007 all species →	Domain	VWFC domain	Interproscan
IPR006207 all species →	Domain	Cystine knot, C-terminal	Interproscan
IPR002919 all species →	Domain	Trypsin Inhibitor-like, cysteine rich domain	Interproscan
IPR023415 all species →	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24543 all species →	MULTICOPPER OXIDASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap7.408.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.