Genomic Location: Ap7:5636135...5641251
NR annotation: XP_020616390.1, vesicle-trafficking protein SEC22a-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap7.461 |
| Transcript |
| evm.model.Ap7.461 |
| Protein |
| evm.model.Ap7.461 |
| UniProt accession | Description |
|---|---|
| Q642F4 | Vesicle-trafficking protein SEC22a OS=Rattus norvegicus OX=10116 GN=Sec22a PE=2 SV=1 |
| Q8BH47 | Vesicle-trafficking protein SEC22a OS=Mus musculus OX=10090 GN=Sec22a PE=2 SV=1 |
| Q4R866 | Vesicle-trafficking protein SEC22a OS=Macaca fascicularis OX=9541 GN=SEC22A PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007898 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13774 all species → | Longin | Regulated-SNARE-like domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR010908 all species → | Domain | Longin domain | Interproscan |
| IPR044565 all species → | Family | Vesicle-trafficking protein Sec22 | Interproscan |
| IPR011012 all species → | Homologous_superfamily | Longin-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45837 all species → | VESICLE-TRAFFICKING PROTEIN SEC22B | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000139 all species → | Cellular Component | Golgi membrane | Interproscan |
| GO:0005484 all species → | Molecular Function | SNAP receptor activity | Interproscan |
| GO:0005789 all species → | Cellular Component | endoplasmic reticulum membrane | Interproscan |
| GO:0005793 all species → | Cellular Component | endoplasmic reticulum-Golgi intermediate compartment | Interproscan |
| GO:0006888 all species → | Biological Process | endoplasmic reticulum to Golgi vesicle-mediated transport | Interproscan |
| GO:0006890 all species → | Biological Process | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum | Interproscan |
| GO:0012507 all species → | Cellular Component | ER to Golgi transport vesicle membrane | Interproscan |
| GO:0031201 all species → | Cellular Component | SNARE complex | Interproscan |
| GO:0048280 all species → | Biological Process | vesicle fusion with Golgi apparatus | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K08520 | SEC22A_C; SEC22 vesicle trafficking protein A/C | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of evm.model.Ap7.461 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
