Gene detail

Detailed information of evm.model.Ap7.492 in Astrangia poculata

Genomic Location: Ap7:6039520...6060388
NR annotation: XP_020609283.1, guanylate-binding protein 6-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap7.492

atggatgtcggaatccatccttcagggaaaagacagtctgcgatcccgctttgtctccctcgcaactaccgctgggattcacaaaccgggaagtgtattgaaacgggagaccatcactccgaactatatgtgattgaggaagctcttgaccaactcaggaaaagtaaaggtcccgtgtgtgtggtgtctatttgcggtccatgcaggaaaggaaagtcatacgtgttaagtgaagcttttgatcaaccagacgttttccctcttggacatgaaatggttcccgagaccatgggaatatggttatggattataccagaaaaatataaggatgccagtggtcaggaatttacagtccttctactggacactgaaggatctgatcaagtatttactgaggactcttattgtggacgcgtcttcaccttaactgttttgctgtcctccgtgctaatttacaactcgcaaggtgttcccggacgaagcgacttagcaggaatggaaatccagcacaaatcgatcactgaagcgtgcagttttcaagacgggaccgtgttgtttcacaaaacatttcctcgttttatctggctgttgcgagatgttacacagtgtctgcctagtgactgccgagacataaaggaatactttctacaaaaggttttcaaaaaacagtcatcaggttctggtgatcgaagcaatcgagttgctgaagctatcttaggcttctttcctcattttgacgcgttcgccttaccccctcctgcagtggatcctgagttgatgagaaatttaaatgagaatgggcacaagctcaatcctttgttccttagtcgtttacagcagttgaaaatattactgcgacaaaacctggaagctaagcgcagcgtcattgaaggagaaagtctcaccggagaagggctggctgccaccgtccagattcatgttaaaacattaaacaaccctggtttaattgctgatttgcaattggcctggatgaaggttcaattagagaacattaaaacatggcaaagcagtgagccccaacgaggaataaaagatctagagcttgaacagagaaatgcggaactcgaacagaaaaacgcagagttgaaaaaggaaatagaggatcaagcgaacaaactcagcagcagcactgacaagcttaaagggtctcatcagaaaatacaagagcttgaacagataatacacgagcaaagtagggggaatcaacggagaattaaagcgcttgaacaaagaaataaggatctcgagcagaaaaatgcagataaagtgaaagaacttagtagcagcaccaaaaatcttaaagcttttcaacagaaaacacaagaacttcaacagaaagtacaggaacaaaggaacaatcacaagggttttcaacggaaattaaaagaacttgaacaaagaaatacaaagctggaagagaaactgcaggagcaggacaacaaacttaagcatacgatggaactggatcgatacgaaattggcgaaggtccacgtggcatttgccttgtaataaacaatgtcgactttcggggcgaggatgaacgccacgggggcgagatcgacgaaaagaagatagcaattcttttcagtgaggaactccacttcatagtggtaattaaacgaaatctaagtggcgtcgacattctcaaatcagcccaagaaattgcagccaaagatcacagcaaatatgcggcctttgtgtttatcatcatgtcgcatggtgacaaaaaggatgctattcatggcgtcgatggtagaaaggcgagagtggaagatctaatgtctgagttcacggcaacaaattgtccaacacttgaaaacaaacccaagctgtttttcattcaagcatgtagaggccaatcaagcgatcgaagaatgagtcggcttgcaccagcagacaacattgaaggcgacagttttgcactaacgctctctgccgactcaaacctcccaaacggtatttctccccgagaagctgactttctgttggcattcgcgacagtaccagggtacatagcatggcgaagtaaaaaagtgggctcgtggtttattcaagtattggtggatgtcatccgaaagtaccaccgtcatcaccatttgctagacatgctgacagaagtcaacaagcaagtagcggacatagcaaatgacaatcctgacgttgatctttcatttcaagtcccagctcctactcacacactgagagcacaagtgttcctgtag

Transcript

evm.model.Ap7.492

ATGGATGTCGGAATCCATCCTTCAGGGAAAAGACAGTCTGCGATCCCGCTTTGTCTCCCTCGCAACTACCGCTGGGATTCACAAACCGGGAAGTGTATTGAAACGGGAGACCATCACTCCGAACTATATGTGATTGAGGAAGCTCTTGACCAACTCAGGAAAAGTAAAGGTCCCGTGTGTGTGGTGTCTATTTGCGGTCCATGCAGGAAAGGAAAGTCATACGTGTTAAGTGAAGCTTTTGATCAACCAGACGTTTTCCCTCTTGGACATGAAATGGTTCCCGAGACCATGGGAATATGGTTATGGATTATACCAGAAAAATATAAGGATGCCAGTGGTCAGGAATTTACAGTCCTTCTACTGGACACTGAAGGATCTGATCAAGTATTTACTGAGGACTCTTATTGTGGACGCGTCTTCACCTTAACTGTTTTGCTGTCCTCCGTGCTAATTTACAACTCGCAAGGTGTTCCCGGACGAAGCGACTTAGCAGGAATGGAAATCCAGCACAAATCGATCACTGAAGCGTGCAGTTTTCAAGACGGGACCGTGTTGTTTCACAAAACATTTCCTCGTTTTATCTGGCTGTTGCGAGATGTTACACAGTGTCTGCCTAGTGACTGCCGAGACATAAAGGAATACTTTCTACAAAAGGTTTTCAAAAAACAGTCATCAGGTTCTGGTGATCGAAGCAATCGAGTTGCTGAAGCTATCTTAGGCTTCTTTCCTCATTTTGACGCGTTCGCCTTACCCCCTCCTGCAGTGGATCCTGAGTTGATGAGAAATTTAAATGAGAATGGGCACAAGCTCAATCCTTTGTTCCTTAGTCGTTTACAGCAGTTGAAAATATTACTGCGACAAAACCTGGAAGCTAAGCGCAGCGTCATTGAAGGAGAAAGTCTCACCGGAGAAGGGCTGGCTGCCACCGTCCAGATTCATGTTAAAACATTAAACAACCCTGGTTTAATTGCTGATTTGCAATTGGCCTGGATGAAGGTTCAATTAGAGAACATTAAAACATGGCAAAGCAGTGAGCCCCAACGAGGAATAAAAGATCTAGAGCTTGAACAGAGAAATGCGGAACTCGAACAGAAAAACGCAGAGTTGAAAAAGGAAATAGAGGATCAAGCGAACAAACTCAGCAGCAGCACTGACAAGCTTAAAGGGTCTCATCAGAAAATACAAGAGCTTGAACAGATAATACACGAGCAAAGTAGGGGGAATCAACGGAGAATTAAAGCGCTTGAACAAAGAAATAAGGATCTCGAGCAGAAAAATGCAGATAAAGTGAAAGAACTTAGTAGCAGCACCAAAAATCTTAAAGCTTTTCAACAGAAAACACAAGAACTTCAACAGAAAGTACAGGAACAAAGGAACAATCACAAGGGTTTTCAACGGAAATTAAAAGAACTTGAACAAAGAAATACAAAGCTGGAAGAGAAACTGCAGGAGCAGGACAACAAACTTAAGCATACGATGGAACTGGATCGATACGAAATTGGCGAAGGTCCACGTGGCATTTGCCTTGTAATAAACAATGTCGACTTTCGGGGCGAGGATGAACGCCACGGGGGCGAGATCGACGAAAAGAAGATAGCAATTCTTTTCAGTGAGGAACTCCACTTCATAGTGGTAATTAAACGAAATCTAAGTGGCGTCGACATTCTCAAATCAGCCCAAGAAATTGCAGCCAAAGATCACAGCAAATATGCGGCCTTTGTGTTTATCATCATGTCGCATGGTGACAAAAAGGATGCTATTCATGGCGTCGATGGTAGAAAGGCGAGAGTGGAAGATCTAATGTCTGAGTTCACGGCAACAAATTGTCCAACACTTGAAAACAAACCCAAGCTGTTTTTCATTCAAGCATGTAGAGGCCAATCAAGCGATCGAAGAATGAGTCGGCTTGCACCAGCAGACAACATTGAAGGCGACAGTTTTGCACTAACGCTCTCTGCCGACTCAAACCTCCCAAACGGTATTTCTCCCCGAGAAGCTGACTTTCTGTTGGCATTCGCGACAGTACCAGGGTACATAGCATGGCGAAGTAAAAAAGTGGGCTCGTGGTTTATTCAAGTATTGGTGGATGTCATCCGAAAGTACCACCGTCATCACCATTTGCTAGACATGCTGACAGAAGTCAACAAGCAAGTAGCGGACATAGCAAATGACAATCCTGACGTTGATCTTTCATTTCAAGTCCCAGCTCCTACTCACACACTGAGAGCACAAGTGTTCCTGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P97864	Caspase-7 OS=Mus musculus OX=10090 GN=Casp7 PE=1 SV=2
P55866	Caspase-3 OS=Xenopus laevis OX=8355 GN=casp3 PE=2 SV=1
P55210	Caspase-7 OS=Homo sapiens OX=9606 GN=CASP7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000346 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00656 all species →	Peptidase_C14	Caspase domain	Domain	Interproscan
PF02263 all species →	GBP	Guanylate-binding protein, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029030 all species →	Homologous_superfamily	Caspase-like domain superfamily	Interproscan
IPR015917 all species →	Domain	Peptidase C14A, caspase catalytic domain	Interproscan
IPR002138 all species →	Domain	Peptidase C14, caspase non-catalytic subunit p10	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR033139 all species →	Active_site	Peptidase family C14A, cysteine active site	Interproscan
IPR011600 all species →	Domain	Peptidase C14, caspase domain	Interproscan
IPR001309 all species →	Domain	Peptidase C14, p20 domain	Interproscan
IPR015894 all species →	Domain	Guanylate-binding protein, N-terminal	Interproscan
IPR030386 all species →	Domain	GB1/RHD3-type guanine nucleotide-binding (G) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10751 all species →	GUANYLATE BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0004197 all species →	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap7.492.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.