Detailed information of evm.model.Ap7.50 in Astrangia poculata

Genomic Location: Ap7:483053...490332
NR annotation: XP_020609226.1, collagen alpha-1(XVII) chain-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008303 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01391
all species →		CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008160
all species →		RepeatCollagen triple helix repeatInterproscan
IPR050632
all species →		FamilyNematode Cuticular CollagenInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24637
all species →		COLLAGENInterproscan

 Gene Ontology
No Gene Ontology signature was detected for evm.model.Ap7.50. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap7.50.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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