Detailed information of evm.model.Ap7.51 in Astrangia poculata

Genomic Location: Ap7:500458...509466
NR annotation: XP_020609225.1, E3 ubiquitin-protein ligase ZSWIM2-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8NEG5E3 ubiquitin-protein ligase ZSWIM2 OS=Homo sapiens OX=9606 GN=ZSWIM2 PE=1 SV=2
Q9D9X6E3 ubiquitin-protein ligase Zswim2 OS=Mus musculus OX=10090 GN=Zswim2 PE=1 SV=1
Q9M622Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007859 (this species only)
Ubiquitin familyE3|E3 activity RING|PHD · all ubiquitin genes in this species
Ubiquitin familyE3|E3 activity RING|RING · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00569
all species →		ZZZinc finger, ZZ typeDomainInterproscan
PF13639
all species →		zf-RING_2Ring finger domainDomainInterproscan
PF04434
all species →		SWIMSWIM zinc fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR000433
all species →		DomainZinc finger, ZZ-typeInterproscan
IPR039903
all species →		FamilyE3 ubiquitin-protein ligase Zswim2Interproscan
IPR043145
all species →		Homologous_superfamilyZinc finger, ZZ-type superfamilyInterproscan
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR007527
all species →		DomainZinc finger, SWIM-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21540
all species →		RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15716ZSWIM2; E3 ubiquitin-protein ligase ZSWIM2EC:2.3.2.27
Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP