Genomic Location: Ap7:6938073...6956258
NR annotation: XP_020611493.1, uncharacterized protein LOC110049928 isoform X2 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap7.605 |
| Transcript |
| evm.model.Ap7.605 |
| Protein |
| evm.model.Ap7.605 |
| UniProt accession | Description |
|---|---|
| C0HL12 | Adhesion G protein-coupled receptor B1 OS=Rattus norvegicus OX=10116 GN=Adgrb1 PE=1 SV=1 |
| Q3UHD1 | Adhesion G protein-coupled receptor B1 OS=Mus musculus OX=10090 GN=Adgrb1 PE=1 SV=1 |
| O14514 | Adhesion G protein-coupled receptor B1 OS=Homo sapiens OX=9606 GN=ADGRB1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002840 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00090 all species → | TSP_1 | Thrombospondin type 1 domain | Domain | Interproscan |
| PF12661 all species → | hEGF | Human growth factor-like EGF | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000742 all species → | Domain | EGF-like domain | Interproscan |
| IPR000884 all species → | Repeat | Thrombospondin type-1 (TSP1) repeat | Interproscan |
| IPR008993 all species → | Homologous_superfamily | Tissue inhibitor of metalloproteinases-like, OB-fold | Interproscan |
| IPR050969 all species → | Family | Developmental Signaling Modulators | Interproscan |
| IPR004850 all species → | Domain | NtA (N-terminal agrin) domain | Interproscan |
| IPR048287 all species → | Domain | Thrombospondin-like, N-terminal domain | Interproscan |
| IPR036383 all species → | Homologous_superfamily | Thrombospondin type-1 (TSP1) repeat superfamily | Interproscan |
| IPR013032 all species → | Conserved_site | EGF-like, conserved site | Interproscan |
| IPR013320 all species → | Homologous_superfamily | Concanavalin A-like lectin/glucanase domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14949 all species → | EGF-LIKE-DOMAIN, MULTIPLE 7, 8 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005102 all species → | Molecular Function | signaling receptor binding | Interproscan |
| GO:0005576 all species → | Cellular Component | extracellular region | Interproscan |
| GO:0009986 all species → | Cellular Component | cell surface | Interproscan |
| GO:0048856 all species → | Biological Process | anatomical structure development | Interproscan |
| GO:0043113 all species → | Biological Process | receptor clustering | Interproscan |
| GO:0043236 all species → | Molecular Function | laminin binding | Interproscan |
evm.model.Ap7.605.Transcript abundance of evm.model.Ap7.605 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
