Gene detail

Detailed information of evm.model.Ap7.856 in Astrangia poculata

Genomic Location: Ap7:9453703...9467815
NR annotation: CAH3124645.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap7.856

atgaatcttttgccttcgtccacagttcgtctgatcgccagttcccaagtgatcacttctgtcagttctgttgtaaaagaactgattgagaattctcttgatgctggcgcgtcaagcattgaaatcaaactggatggctggggcttggaaagaatcgaagttcgtgacaatggctgtggcattaaacctgaagatgctccctttatggctcaagcacattacacttcaaaaatatcaagtgacaatgacttaaaatccctccagacttatggtttccgaggtgaggctctagggtcactttcgtcagttagcaatgtatccattttgaccaagacagactctgaagaagttggtatgctgtacacgctagagcgcaatggtaaaataggagccactcaaccgaaacctactactactggcacaactattagcgcaacaaacttatttaaaaacctccctgtccgaaagcaattttccagcaacagcaaaaagtgcaaagatgagttgaaaagagttgaggacttagtgatggcatatgcgttaatacaccccaccctgcggattaccttacggcataataaggctgttgtctggcagaagagtaaagttgcagatcaaagaacagctttattgtctgtttttgggacatcattgttggcacaaatgggtgtgatagagtttcatgatgaaaatagcagtggtattcatgtacttggatatcttccaaggcctggatatgatttggaaattactggacgtgcagtgaatgacagatgttttatctcttttaatgggaggcctgtgaatatgaagcaaatttctcagctgatcaagcaatactacaacaagcaaacagctgtttcatccaacagataccctgttgcatttttaagtgtgaacattcctccagaactccttgatgtcaatctggaacccaacaaaaccagtgtgatgttgacaaacaaagatgaactgatgacaattttaactaacctattagaagagttttattctgatgagaaaaacaagctccccttaagcaaatgtactgattgtaacagcactacagaaaagagcattgctgtaattgggaaacttggtgacatcacaaacacttgtggcttgaatggagacgttgctactcatgcatccagcaacctacgtgagaaaagtaaagaaaaagaaagatttcttcctttggacagtaatatagtgccagaagacaccccaagcttggaacatgaagttgaagaaacttacaatgagcaagtaaatacaagtagtgacaaaaataatacacaagaaaatactttgagtaataaaaatgatttgcagactgagagagagaaatcatcccatcatgaaggaataagcccaaccaaccaaacagataaactgccaagttcagttgtagtccaaaagggaacaataaatcaagcagtttctttaccttcttcccagcaagaagacacatgcatgttgtctccaacagactctttgcaatctgtagaactcggtgagacatttagtgacaacactttgtgtgaagtcagtgaatcaatgtgtaatatggagaaaaatgtgtgcaactcctctaaagagtccagcagtgttgcagaaactggtcattctgagactagtcaaaatgtttcaaatttgaataatgaaaagagcaacaggcttaacaaattaccagaaacgaaaacagcaaacactggaaatagctcaaatgcaactgacactgatggaaaaccaaaaggaagtcaagaactgtctaagaatagaacactggtatgcactccttccaatagcccctcgcttggaaactcattttctcttgatttggatgatctgtttgacgattctgacttggatctctttagtgtagactccaaattaaaaacaccacacacatcaaaccatgtgcgcaattcagagaaggatgcctctgtagaaatgccttcctctacagccgtggaacgatctgtctctgcagtgaaaccgtcaatgacagtagctgtttcatctggaacaacaaaggctcagtgtagtgacaaggagtggagcatgggatgtggaattgtggataagcagggaaatcctgtgcagcctgttaccttggttactcctggtcctccacggcagatacctgttaatagaacacctgtttataatacccctctacatggaaagaggaagctttcatctgatcaggacaagtcaaggttgtctctgtccagcaagaagatcaagaaaaccccagagatcacaaaccagccacttataaacaaagtgatgtcaccaaatccactgcagagaaaactgctctacaggaaaacagaaataacattttctttgagtgacttaaaggagtcagtgaagagaaaaacggatcggaggtcaatagaagattccaattcagaccatttgattggtcgactggatccgtggggagtgtggctgctgctcaggggaactgatattgtttgcgtcaatcaatacagaattcaagagcaacttctttttcaacgtttgatggcttgtcattctctgcctaaagaaggacttaaccatccaattactttgaacgagagaattgttggtggtcctgactgttggaggacgttgtgtaacatgagcagcaagtgtgacccaccagacacaacaagatggattgacgatgagagattaactgcgaatggatttgatgtctgtttaaagagagattcagagagtggagagaccaaagtagagctgtaccaaatgtgcactagcataccaggctatggcgtaccggatctggcgaaagtgcttgaacttgcttctcaaaagtactcaagtgattccaattctctgtcaagctgtagacccttcaaggttgtccactatctacagggtgaggcagtgcgagtcgcacggaccctaagttcccggatgaataggaccgaagtggatgagctactatcccggatggaagagcaaattcccgaggtcgcgagaacgtgcgttcacgggcgttcattctttgaaaagatcgcggaaattccgcaagaatga

Transcript

evm.model.Ap7.856

ATGAATCTTTTGCCTTCGTCCACAGTTCGTCTGATCGCCAGTTCCCAAGTGATCACTTCTGTCAGTTCTGTTGTAAAAGAACTGATTGAGAATTCTCTTGATGCTGGCGCGTCAAGCATTGAAATCAAACTGGATGGCTGGGGCTTGGAAAGAATCGAAGTTCGTGACAATGGCTGTGGCATTAAACCTGAAGATGCTCCCTTTATGGCTCAAGCACATTACACTTCAAAAATATCAAGTGACAATGACTTAAAATCCCTCCAGACTTATGGTTTCCGAGGTGAGGCTCTAGGGTCACTTTCGTCAGTTAGCAATGTATCCATTTTGACCAAGACAGACTCTGAAGAAGTTGGTATGCTGTACACGCTAGAGCGCAATGGTAAAATAGGAGCCACTCAACCGAAACCTACTACTACTGGCACAACTATTAGCGCAACAAACTTATTTAAAAACCTCCCTGTCCGAAAGCAATTTTCCAGCAACAGCAAAAAGTGCAAAGATGAGTTGAAAAGAGTTGAGGACTTAGTGATGGCATATGCGTTAATACACCCCACCCTGCGGATTACCTTACGGCATAATAAGGCTGTTGTCTGGCAGAAGAGTAAAGTTGCAGATCAAAGAACAGCTTTATTGTCTGTTTTTGGGACATCATTGTTGGCACAAATGGGTGTGATAGAGTTTCATGATGAAAATAGCAGTGGTATTCATGTACTTGGATATCTTCCAAGGCCTGGATATGATTTGGAAATTACTGGACGTGCAGTGAATGACAGATGTTTTATCTCTTTTAATGGGAGGCCTGTGAATATGAAGCAAATTTCTCAGCTGATCAAGCAATACTACAACAAGCAAACAGCTGTTTCATCCAACAGATACCCTGTTGCATTTTTAAGTGTGAACATTCCTCCAGAACTCCTTGATGTCAATCTGGAACCCAACAAAACCAGTGTGATGTTGACAAACAAAGATGAACTGATGACAATTTTAACTAACCTATTAGAAGAGTTTTATTCTGATGAGAAAAACAAGCTCCCCTTAAGCAAATGTACTGATTGTAACAGCACTACAGAAAAGAGCATTGCTGTAATTGGGAAACTTGGTGACATCACAAACACTTGTGGCTTGAATGGAGACGTTGCTACTCATGCATCCAGCAACCTACGTGAGAAAAGTAAAGAAAAAGAAAGATTTCTTCCTTTGGACAGTAATATAGTGCCAGAAGACACCCCAAGCTTGGAACATGAAGTTGAAGAAACTTACAATGAGCAAGTAAATACAAGTAGTGACAAAAATAATACACAAGAAAATACTTTGAGTAATAAAAATGATTTGCAGACTGAGAGAGAGAAATCATCCCATCATGAAGGAATAAGCCCAACCAACCAAACAGATAAACTGCCAAGTTCAGTTGTAGTCCAAAAGGGAACAATAAATCAAGCAGTTTCTTTACCTTCTTCCCAGCAAGAAGACACATGCATGTTGTCTCCAACAGACTCTTTGCAATCTGTAGAACTCGGTGAGACATTTAGTGACAACACTTTGTGTGAAGTCAGTGAATCAATGTGTAATATGGAGAAAAATGTGTGCAACTCCTCTAAAGAGTCCAGCAGTGTTGCAGAAACTGGTCATTCTGAGACTAGTCAAAATGTTTCAAATTTGAATAATGAAAAGAGCAACAGGCTTAACAAATTACCAGAAACGAAAACAGCAAACACTGGAAATAGCTCAAATGCAACTGACACTGATGGAAAACCAAAAGGAAGTCAAGAACTGTCTAAGAATAGAACACTGGTATGCACTCCTTCCAATAGCCCCTCGCTTGGAAACTCATTTTCTCTTGATTTGGATGATCTGTTTGACGATTCTGACTTGGATCTCTTTAGTGTAGACTCCAAATTAAAAACACCACACACATCAAACCATGTGCGCAATTCAGAGAAGGATGCCTCTGTAGAAATGCCTTCCTCTACAGCCGTGGAACGATCTGTCTCTGCAGTGAAACCGTCAATGACAGTAGCTGTTTCATCTGGAACAACAAAGGCTCAGTGTAGTGACAAGGAGTGGAGCATGGGATGTGGAATTGTGGATAAGCAGGGAAATCCTGTGCAGCCTGTTACCTTGGTTACTCCTGGTCCTCCACGGCAGATACCTGTTAATAGAACACCTGTTTATAATACCCCTCTACATGGAAAGAGGAAGCTTTCATCTGATCAGGACAAGTCAAGGTTGTCTCTGTCCAGCAAGAAGATCAAGAAAACCCCAGAGATCACAAACCAGCCACTTATAAACAAAGTGATGTCACCAAATCCACTGCAGAGAAAACTGCTCTACAGGAAAACAGAAATAACATTTTCTTTGAGTGACTTAAAGGAGTCAGTGAAGAGAAAAACGGATCGGAGGTCAATAGAAGATTCCAATTCAGACCATTTGATTGGTCGACTGGATCCGTGGGGAGTGTGGCTGCTGCTCAGGGGAACTGATATTGTTTGCGTCAATCAATACAGAATTCAAGAGCAACTTCTTTTTCAACGTTTGATGGCTTGTCATTCTCTGCCTAAAGAAGGACTTAACCATCCAATTACTTTGAACGAGAGAATTGTTGGTGGTCCTGACTGTTGGAGGACGTTGTGTAACATGAGCAGCAAGTGTGACCCACCAGACACAACAAGATGGATTGACGATGAGAGATTAACTGCGAATGGATTTGATGTCTGTTTAAAGAGAGATTCAGAGAGTGGAGAGACCAAAGTAGAGCTGTACCAAATGTGCACTAGCATACCAGGCTATGGCGTACCGGATCTGGCGAAAGTGCTTGAACTTGCTTCTCAAAAGTACTCAAGTGATTCCAATTCTCTGTCAAGCTGTAGACCCTTCAAGGTTGTCCACTATCTACAGGGTGAGGCAGTGCGAGTCGCACGGACCCTAAGTTCCCGGATGAATAGGACCGAAGTGGATGAGCTACTATCCCGGATGGAAGAGCAAATTCCCGAGGTCGCGAGAACGTGCGTTCACGGGCGTTCATTCTTTGAAAAGATCGCGGAAATTCCGCAAGAATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P54277	PMS1 protein homolog 1 OS=Homo sapiens OX=9606 GN=PMS1 PE=1 SV=1
Q941I6	DNA mismatch repair protein PMS1 OS=Arabidopsis thaliana OX=3702 GN=PMS1 PE=1 SV=1
P54279	Mismatch repair endonuclease PMS2 OS=Mus musculus OX=10090 GN=Pms2 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004912 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13589 all species →	HATPase_c_3	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan
PF01119 all species →	DNA_mis_repair	DNA mismatch repair protein, C-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR014762 all species →	Conserved_site	DNA mismatch repair, conserved site	Interproscan
IPR014721 all species →	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR038973 all species →	Family	DNA mismatch repair protein MutL/Mlh/Pms-like	Interproscan
IPR002099 all species →	Family	DNA mismatch repair protein MutL/Mlh/PMS	Interproscan
IPR013507 all species →	Domain	DNA mismatch repair protein, S5 domain 2-like	Interproscan
IPR036890 all species →	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10073 all species →	DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006298 all species →	Biological Process	mismatch repair	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0032300 all species →	Cellular Component	mismatch repair complex	Interproscan
GO:0032389 all species →	Cellular Component	MutLalpha complex	Interproscan
GO:0140664 all species →	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0030983 all species →	Molecular Function	mismatched DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10864	PMS1; DNA mismatch repair protein PMS1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.