Detailed information of evm.model.Ap7.864.1.5f15e886 in Astrangia poculata

Genomic Location: Ap7:9516146...9535154
NR annotation: KAJ7380063.1, hypothetical protein OS493_010770 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O54697Aminopeptidase NAALADL1 OS=Rattus norvegicus OX=10116 GN=Naaladl1 PE=1 SV=1
Q7M758Aminopeptidase NAALADL1 OS=Mus musculus OX=10090 GN=Naaladl1 PE=2 SV=1
Q9UQQ1Aminopeptidase NAALADL1 OS=Homo sapiens OX=9606 GN=NAALADL1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000217 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04253
all species →
TFR_dimerTransferrin receptor-like dimerisation domainDomainInterproscan
PF04389
all species →
Peptidase_M28Peptidase family M28FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036757
all species →
Homologous_superfamilyTransferrin receptor-like, dimerisation domain superfamilyInterproscan
IPR007365
all species →
DomainTransferrin receptor-like, dimerisation domainInterproscan
IPR046450
all species →
Homologous_superfamilyPA domain superfamilyInterproscan
IPR039373
all species →
FamilyTransferrin receptor protein 1/Glutamate carboxypeptidase 2-likeInterproscan
IPR007484
all species →
DomainPeptidase M28Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10404
all species →
N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004180
all species →
Molecular Functioncarboxypeptidase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap7.864.1.5f15e886.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap7.864.1.5f15e886 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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