Gene detail

Detailed information of evm.model.Ap7.930 in Astrangia poculata

Genomic Location: Ap7:10202655...10233228
NR annotation: RMX57247.1, hypothetical protein pdam_00010580, partial [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap7.930

atgaatcctgatcctagagagtgtaatatcaaggttttctcgcggtttcgaccgcaatcgagcgcagaagttcgggcaggaggacaaaatatagtatccactccatcgactgaaacttgcattcatgggggaagaaccttcacattcgatcgcgttttcaaaccgagcacctcgcaagaaagagtttatgtggaagcagcccaagttatcgtccaagatgtgctcaatgggtataatgggacaatatttgcttacgggcagacgtcaagtgggaaaacccacacaatggagtattttgaaaaaagcgtgatattctgtctcaatggcgtggtagcttatgatgataataatgaccacgatgtcacttacaacgacaacagcaacgatgatgatgatgatgatgatgatgatggtgttctcaatgatcccgtcaatcagggaatcattcctcgaattgtacaagatatattcaattacatttacaatatggatgaaaatttggagtttcatattaaggtttcctattttgaaatttaccttgacaaaatcagggatctattagatgttacaaaaacaagcttagctgttcatgaagacaaaaatagagttccttttgtgaagggtgccagtgaaagatttgtttccagccctgaagaagtcatggaaattattgatgagggaaaagctaatcgccatgtggcagttacaaatatgaatgagcatagttcaagaagtcatagtatttttctccttcacattaaacaagaaaatgtggaaaccaacaagaaactaagtggcaagctttatttagtggatttagctggatctgaaaaggtcagcaaaactggagcagagggttctgtccttgatgaagctaagaacatcaacaagtcgctgtctgcattaggaaatgtcatttctgctttagcagaaggaacgaaaacccatgttccctacagagacagtaaaatgacgagaatattacaggaaagtctgggtgggaatgcaagaacaacgattatcatttgctgttccccgtcatcattcaacgagcaagaaacacggtcaactctcatgtttggtcaaagagccaagaccatcaagaatgttgtagtgatcaacgaagagcttacagcagaagaatggaaaagacgctttgaaaaagagaaagagaaggttgctaagcttcgaggagccttgggcagatacgaacaagaactgcagcggtggcggggaggtgaggcagttcctgccgatgaacagatgacaaacgccaaagacaatcgtaattcccaggtgtttgagagtctagctctcttggcgccttcccagcctgccgttagtgacaaggaaaggaagaaatttgaggatgaaaagtcaaagctgtacactcagctagacgagaaggatgatgaaattcagaatcaagcacggttaattaaccaactgaaggagcaactgggtgaacaagaggaagctctgaagacaactcaatttgacagtgagaagctgcagtcacagataagctccatgcagagcgagagtgaaacgtcgaaaacagaggtcaaagaagtgctccaagctcttgaagagcttgccgtgaattatgaccagaaactgcaagaggttgaaaccaaaactaaggataacgagaagctttctgaagaattatcacagaagcagacacagctcaacaaagcttccaaggaattggtggagatcaaagacagtacatcagtgttaagaaagagactggctgaaatgatgaacagtttgctgtccgatctgggtgaaattggtaacgtcattggaggaaatgcagctgagattaagaaacccaatattgactgcagtggcaagttggacgaagatttcacagtggcccgactttacgtgaataaaatcaagtcagaagtgaaaactctctctgtgcgctccagcactttggaattgacagaaagtgatttgaagtcgtcactcgatggaaagaacaaagagctgaaccagtcaatgcttctcatatcacagtatgaagcgaaaatgaagaccctcgaggcaaacatgaaagaaatggagtctaagaagaggattttagaagaagctgttgattcattgaacgaagaaatagctaaactgaaggcaaaagcccagatgcatgctctggctctcaaagacaaggaagaggaacatgctggcctgcttcacacagcgggtgaaatacagtctgaactggagatgcaaatgatcagtcatcgcgaggcgcaccagaaacaactgtcgctcctgagagacgaaattgaatctcagcacggaattattgcaacaatcaaggaaaccaatcagaagcagactttagaaagggatcaccttatgcttgaaaatgattctttgaaaagagaacttgaagagaaatcatctcgattgatcgacctgaatgtgcaagcggagaagagagaacaagcaaagaacgatctaaaaggactcgaagagactgtgcataaagagttggcgacgctttaccgacttcggcagttgttcgtcaaagatttgcaggctcggttaaaagtgaccaacgcggataccgacgcagaggaggaagggggaagtcaagcacaaaaacaaaagattgcttttttagagaataatttggaccagctaacgaaggtccataaacaactcgttagagataatgccgacctgaggtgtgaattgcccaagctagagaagcgcctgcgagcaacacaagagcgggtgaagtcattagagcaggctctaaaagaggccaaggaaggcgcgcagagggaccgggcacgataccagaaggaggtcgaaagaatccgggaatccatgagacagaaacaggcgcaggccagaaagggagctcagggacatatcgccaaacctatccgcccaggccagcaacccacatcacccagcgtccgtcccggcagtagcgcgggcatcggcagtgccttattaggaatgacccgtttggctggcggagcagtcatgggttccaacgttcccaacagtccaagcacacccagtttacccagctcccccaatggagcaacaatagtgacgcctgtgattcgtggcgggaaaagctcggaacctgtggtctcgtacagcaagaggatacgaaatgcagtcagtacagagtctcttaatcgccccctaccacaggggagccctagtttgaatggcgcccattcttcgccagattatgaaagaaggcgcggctcagcagcatcagctggcgcggttactcattcttcaaatgcgcacatgcgtgctgcagccagtgtggaccggctcaacatgatgggcgatgggaattctggacgaaaattgccgtctatgccagattcaatgcagcggtcgccaatgaagatttcaggtcgtgaaggagaaatagcagctttgaagagaagtaatcggagatcggcgtcctcgcacaacttagtaaatagtactgatggtggaccatgggagatgagaaagcaatcagcgtcataa

Transcript

evm.model.Ap7.930

ATGAATCCTGATCCTAGAGAGTGTAATATCAAGGTTTTCTCGCGGTTTCGACCGCAATCGAGCGCAGAAGTTCGGGCAGGAGGACAAAATATAGTATCCACTCCATCGACTGAAACTTGCATTCATGGGGGAAGAACCTTCACATTCGATCGCGTTTTCAAACCGAGCACCTCGCAAGAAAGAGTTTATGTGGAAGCAGCCCAAGTTATCGTCCAAGATGTGCTCAATGGGTATAATGGGACAATATTTGCTTACGGGCAGACGTCAAGTGGGAAAACCCACACAATGGAGTATTTTGAAAAAAGCGTGATATTCTGTCTCAATGGCGTGGTAGCTTATGATGATAATAATGACCACGATGTCACTTACAACGACAACAGCAACGATGATGATGATGATGATGATGATGATGGTGTTCTCAATGATCCCGTCAATCAGGGAATCATTCCTCGAATTGTACAAGATATATTCAATTACATTTACAATATGGATGAAAATTTGGAGTTTCATATTAAGGTTTCCTATTTTGAAATTTACCTTGACAAAATCAGGGATCTATTAGATGTTACAAAAACAAGCTTAGCTGTTCATGAAGACAAAAATAGAGTTCCTTTTGTGAAGGGTGCCAGTGAAAGATTTGTTTCCAGCCCTGAAGAAGTCATGGAAATTATTGATGAGGGAAAAGCTAATCGCCATGTGGCAGTTACAAATATGAATGAGCATAGTTCAAGAAGTCATAGTATTTTTCTCCTTCACATTAAACAAGAAAATGTGGAAACCAACAAGAAACTAAGTGGCAAGCTTTATTTAGTGGATTTAGCTGGATCTGAAAAGGTCAGCAAAACTGGAGCAGAGGGTTCTGTCCTTGATGAAGCTAAGAACATCAACAAGTCGCTGTCTGCATTAGGAAATGTCATTTCTGCTTTAGCAGAAGGAACGAAAACCCATGTTCCCTACAGAGACAGTAAAATGACGAGAATATTACAGGAAAGTCTGGGTGGGAATGCAAGAACAACGATTATCATTTGCTGTTCCCCGTCATCATTCAACGAGCAAGAAACACGGTCAACTCTCATGTTTGGTCAAAGAGCCAAGACCATCAAGAATGTTGTAGTGATCAACGAAGAGCTTACAGCAGAAGAATGGAAAAGACGCTTTGAAAAAGAGAAAGAGAAGGTTGCTAAGCTTCGAGGAGCCTTGGGCAGATACGAACAAGAACTGCAGCGGTGGCGGGGAGGTGAGGCAGTTCCTGCCGATGAACAGATGACAAACGCCAAAGACAATCGTAATTCCCAGGTGTTTGAGAGTCTAGCTCTCTTGGCGCCTTCCCAGCCTGCCGTTAGTGACAAGGAAAGGAAGAAATTTGAGGATGAAAAGTCAAAGCTGTACACTCAGCTAGACGAGAAGGATGATGAAATTCAGAATCAAGCACGGTTAATTAACCAACTGAAGGAGCAACTGGGTGAACAAGAGGAAGCTCTGAAGACAACTCAATTTGACAGTGAGAAGCTGCAGTCACAGATAAGCTCCATGCAGAGCGAGAGTGAAACGTCGAAAACAGAGGTCAAAGAAGTGCTCCAAGCTCTTGAAGAGCTTGCCGTGAATTATGACCAGAAACTGCAAGAGGTTGAAACCAAAACTAAGGATAACGAGAAGCTTTCTGAAGAATTATCACAGAAGCAGACACAGCTCAACAAAGCTTCCAAGGAATTGGTGGAGATCAAAGACAGTACATCAGTGTTAAGAAAGAGACTGGCTGAAATGATGAACAGTTTGCTGTCCGATCTGGGTGAAATTGGTAACGTCATTGGAGGAAATGCAGCTGAGATTAAGAAACCCAATATTGACTGCAGTGGCAAGTTGGACGAAGATTTCACAGTGGCCCGACTTTACGTGAATAAAATCAAGTCAGAAGTGAAAACTCTCTCTGTGCGCTCCAGCACTTTGGAATTGACAGAAAGTGATTTGAAGTCGTCACTCGATGGAAAGAACAAAGAGCTGAACCAGTCAATGCTTCTCATATCACAGTATGAAGCGAAAATGAAGACCCTCGAGGCAAACATGAAAGAAATGGAGTCTAAGAAGAGGATTTTAGAAGAAGCTGTTGATTCATTGAACGAAGAAATAGCTAAACTGAAGGCAAAAGCCCAGATGCATGCTCTGGCTCTCAAAGACAAGGAAGAGGAACATGCTGGCCTGCTTCACACAGCGGGTGAAATACAGTCTGAACTGGAGATGCAAATGATCAGTCATCGCGAGGCGCACCAGAAACAACTGTCGCTCCTGAGAGACGAAATTGAATCTCAGCACGGAATTATTGCAACAATCAAGGAAACCAATCAGAAGCAGACTTTAGAAAGGGATCACCTTATGCTTGAAAATGATTCTTTGAAAAGAGAACTTGAAGAGAAATCATCTCGATTGATCGACCTGAATGTGCAAGCGGAGAAGAGAGAACAAGCAAAGAACGATCTAAAAGGACTCGAAGAGACTGTGCATAAAGAGTTGGCGACGCTTTACCGACTTCGGCAGTTGTTCGTCAAAGATTTGCAGGCTCGGTTAAAAGTGACCAACGCGGATACCGACGCAGAGGAGGAAGGGGGAAGTCAAGCACAAAAACAAAAGATTGCTTTTTTAGAGAATAATTTGGACCAGCTAACGAAGGTCCATAAACAACTCGTTAGAGATAATGCCGACCTGAGGTGTGAATTGCCCAAGCTAGAGAAGCGCCTGCGAGCAACACAAGAGCGGGTGAAGTCATTAGAGCAGGCTCTAAAAGAGGCCAAGGAAGGCGCGCAGAGGGACCGGGCACGATACCAGAAGGAGGTCGAAAGAATCCGGGAATCCATGAGACAGAAACAGGCGCAGGCCAGAAAGGGAGCTCAGGGACATATCGCCAAACCTATCCGCCCAGGCCAGCAACCCACATCACCCAGCGTCCGTCCCGGCAGTAGCGCGGGCATCGGCAGTGCCTTATTAGGAATGACCCGTTTGGCTGGCGGAGCAGTCATGGGTTCCAACGTTCCCAACAGTCCAAGCACACCCAGTTTACCCAGCTCCCCCAATGGAGCAACAATAGTGACGCCTGTGATTCGTGGCGGGAAAAGCTCGGAACCTGTGGTCTCGTACAGCAAGAGGATACGAAATGCAGTCAGTACAGAGTCTCTTAATCGCCCCCTACCACAGGGGAGCCCTAGTTTGAATGGCGCCCATTCTTCGCCAGATTATGAAAGAAGGCGCGGCTCAGCAGCATCAGCTGGCGCGGTTACTCATTCTTCAAATGCGCACATGCGTGCTGCAGCCAGTGTGGACCGGCTCAACATGATGGGCGATGGGAATTCTGGACGAAAATTGCCGTCTATGCCAGATTCAATGCAGCGGTCGCCAATGAAGATTTCAGGTCGTGAAGGAGAAATAGCAGCTTTGAAGAGAAGTAATCGGAGATCGGCGTCCTCGCACAACTTAGTAAATAGTACTGATGGTGGACCATGGGAGATGAGAAAGCAATCAGCGTCATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P21613	Kinesin heavy chain OS=Doryteuthis pealeii OX=1051067 PE=1 SV=1
P35978	Kinesin heavy chain OS=Strongylocentrotus purpuratus OX=7668 PE=2 SV=1
Q2PQA9	Kinesin-1 heavy chain OS=Rattus norvegicus OX=10116 GN=Kif5b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003289 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00225 all species →	Kinesin	Kinesin motor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019821 all species →	Conserved_site	Kinesin motor domain, conserved site	Interproscan
IPR001752 all species →	Domain	Kinesin motor domain	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR027640 all species →	Family	Kinesin-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47968 all species →	CENTROMERE PROTEIN E	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003777 all species →	Molecular Function	microtubule motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0005874 all species →	Cellular Component	microtubule	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10396	KIF5; kinesin family member 5	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.