Gene detail

Detailed information of evm.model.Ap7.968 in Astrangia poculata

Genomic Location: Ap7:10736005...10753765
NR annotation: CAH3124505.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap7.968

atgtcattgaaattgttgtctcttaacaaggctttgtcacagtcccaagttccaagtgaggaagccagcacatctagtgacaatgtacagtcctcagctcagttgtcaagtcgttatactgtaagtgaggaccatcagaaagccaaggatcagtttatggagaaggaaagagaaaatgcaagaatggaagccaaaaggagaaaactaatggagaagagagcacggcaggaaattcttcaacaaatagcagaagacaagatgcataggtgcaacaggaatgcagcaaaaccacctgcacatcctgccatgactcaaacagcaagcagcagtggagaacacaatgaaagcttgcagcacaataaacagtgcttgcttcagattagaggtccaactgggcatatacagagacaagcattcccccctgacgccaaactgcaagatgttgttacttttatctgtagccaataccatctgaactcaggcaactttgaccttttgcagccatttccccacagactcttcactattgctgaaatgacgttgacattggttgaccttggactcagtcctggtggttcacttgttgtaaagaaaagagattttaatccaccatcagcaacatctggtcagggttttgctgaagtcaaccctgaaaatgcttgtgcaatgacatcaagaacggcagacagacctgagaatattgttgggatgccgtcaaacactggtcctgacagagagtacaatcacccctcccacagacatgatgacgacgatagtcacattgatgatgccaatgaggagcatcaagatgtcaaccccccaatatttgatagaagtccaccacccgagttagaggaccaccttagagcaccattagaaggactgaatccaaacgtccttggcatgggtggaatgcagaactttgtcagccagggtcatggtcacatgtggggtgagggaatgagacttggtgccgtacagcataatccacacgctattgaaccagttctgaaagcacaaaccccaggggagtctgctgttaggagactggaaatatatcaacatcaacagcctcgaccagaagcaggccccagtctagtatctcaagaagagccgccattgctccatcgggatgttcaacgtctggaggacttgtgtattaaccacgtcagccatcgtctccctggaaaccagaacccccttactactcttggcatgttaccacacgacctgtgcgacaagatcttgactcatctgatgaagaataaagctcttactccaaaagcaatgcaggcttttatccactgtggtctgcgacatgtgaagctagattgttactctctggtaacaaatgaactcctgatagcactcagactgcacagacatcttacgcacctcagcttaagagcttgtcctctcataacagacaaagcactagaagccgtagcagttctcaagagactgaaatcacttaacataagccagtgtgcccagcttacagacaaatgcttcttccacattaaagagcttccatcactagtgacattacaaatggacatgacaaagataattgatagaggagtgtgccattttctggagaatgctgcctgttgtcccaacttggtacatttaagtttcagtggaacaaatatcacagatagcagcctggcagctatgtctggcctcaaagccctcaagattcttgccatcggcaatacaaagatcgcttctctggatgttgttcatgacttacaccagttggaaagtttgaacatctcgcactgtacaggaatatgtgatgatagtttgaaagctttggtcagccatccatcgcttgtgtcactcaatctactcgcgtcaaatatctctgatgatggactatgttatctgcaaggtcttaagttgtcaaccctcaaactaccaaacagacttaacattacagacaagggagtaaataacattcaaggactccccttggtagctcttgacctgtcagattacattcacatcacagacagtggggttcactgcatagcacatatgacaagattaacacagttgtcacttagcaataccaaactgacagatgatggaatgaaaagcttagcagctctgactgaacttgaagaactaaatgttgacagaacagtgataaccgatgaaggatgtacggtgctgtcatgcttcccacatctcaggattcttggtttgtcatcaacaagaataagtaacaagcttcttttaaatggaactttgaaccactgcaagaatcttgcgagattgaatttgagcaggacccgagtgtcaaataaaagattagcgcacctggttctaccattactgagtcaacttaatcttgattggacaagagtgacaagtgactgtcgtactctaataacaggatgtccttcactgaaggctttgagaactaacaactgcactcctccatcacagcaatctgatgattcagatgatgatcaggaacaacaataa

Transcript

evm.model.Ap7.968

ATGTCATTGAAATTGTTGTCTCTTAACAAGGCTTTGTCACAGTCCCAAGTTCCAAGTGAGGAAGCCAGCACATCTAGTGACAATGTACAGTCCTCAGCTCAGTTGTCAAGTCGTTATACTGTAAGTGAGGACCATCAGAAAGCCAAGGATCAGTTTATGGAGAAGGAAAGAGAAAATGCAAGAATGGAAGCCAAAAGGAGAAAACTAATGGAGAAGAGAGCACGGCAGGAAATTCTTCAACAAATAGCAGAAGACAAGATGCATAGGTGCAACAGGAATGCAGCAAAACCACCTGCACATCCTGCCATGACTCAAACAGCAAGCAGCAGTGGAGAACACAATGAAAGCTTGCAGCACAATAAACAGTGCTTGCTTCAGATTAGAGGTCCAACTGGGCATATACAGAGACAAGCATTCCCCCCTGACGCCAAACTGCAAGATGTTGTTACTTTTATCTGTAGCCAATACCATCTGAACTCAGGCAACTTTGACCTTTTGCAGCCATTTCCCCACAGACTCTTCACTATTGCTGAAATGACGTTGACATTGGTTGACCTTGGACTCAGTCCTGGTGGTTCACTTGTTGTAAAGAAAAGAGATTTTAATCCACCATCAGCAACATCTGGTCAGGGTTTTGCTGAAGTCAACCCTGAAAATGCTTGTGCAATGACATCAAGAACGGCAGACAGACCTGAGAATATTGTTGGGATGCCGTCAAACACTGGTCCTGACAGAGAGTACAATCACCCCTCCCACAGACATGATGACGACGATAGTCACATTGATGATGCCAATGAGGAGCATCAAGATGTCAACCCCCCAATATTTGATAGAAGTCCACCACCCGAGTTAGAGGACCACCTTAGAGCACCATTAGAAGGACTGAATCCAAACGTCCTTGGCATGGGTGGAATGCAGAACTTTGTCAGCCAGGGTCATGGTCACATGTGGGGTGAGGGAATGAGACTTGGTGCCGTACAGCATAATCCACACGCTATTGAACCAGTTCTGAAAGCACAAACCCCAGGGGAGTCTGCTGTTAGGAGACTGGAAATATATCAACATCAACAGCCTCGACCAGAAGCAGGCCCCAGTCTAGTATCTCAAGAAGAGCCGCCATTGCTCCATCGGGATGTTCAACGTCTGGAGGACTTGTGTATTAACCACGTCAGCCATCGTCTCCCTGGAAACCAGAACCCCCTTACTACTCTTGGCATGTTACCACACGACCTGTGCGACAAGATCTTGACTCATCTGATGAAGAATAAAGCTCTTACTCCAAAAGCAATGCAGGCTTTTATCCACTGTGGTCTGCGACATGTGAAGCTAGATTGTTACTCTCTGGTAACAAATGAACTCCTGATAGCACTCAGACTGCACAGACATCTTACGCACCTCAGCTTAAGAGCTTGTCCTCTCATAACAGACAAAGCACTAGAAGCCGTAGCAGTTCTCAAGAGACTGAAATCACTTAACATAAGCCAGTGTGCCCAGCTTACAGACAAATGCTTCTTCCACATTAAAGAGCTTCCATCACTAGTGACATTACAAATGGACATGACAAAGATAATTGATAGAGGAGTGTGCCATTTTCTGGAGAATGCTGCCTGTTGTCCCAACTTGGTACATTTAAGTTTCAGTGGAACAAATATCACAGATAGCAGCCTGGCAGCTATGTCTGGCCTCAAAGCCCTCAAGATTCTTGCCATCGGCAATACAAAGATCGCTTCTCTGGATGTTGTTCATGACTTACACCAGTTGGAAAGTTTGAACATCTCGCACTGTACAGGAATATGTGATGATAGTTTGAAAGCTTTGGTCAGCCATCCATCGCTTGTGTCACTCAATCTACTCGCGTCAAATATCTCTGATGATGGACTATGTTATCTGCAAGGTCTTAAGTTGTCAACCCTCAAACTACCAAACAGACTTAACATTACAGACAAGGGAGTAAATAACATTCAAGGACTCCCCTTGGTAGCTCTTGACCTGTCAGATTACATTCACATCACAGACAGTGGGGTTCACTGCATAGCACATATGACAAGATTAACACAGTTGTCACTTAGCAATACCAAACTGACAGATGATGGAATGAAAAGCTTAGCAGCTCTGACTGAACTTGAAGAACTAAATGTTGACAGAACAGTGATAACCGATGAAGGATGTACGGTGCTGTCATGCTTCCCACATCTCAGGATTCTTGGTTTGTCATCAACAAGAATAAGTAACAAGCTTCTTTTAAATGGAACTTTGAACCACTGCAAGAATCTTGCGAGATTGAATTTGAGCAGGACCCGAGTGTCAAATAAAAGATTAGCGCACCTGGTTCTACCATTACTGAGTCAACTTAATCTTGATTGGACAAGAGTGACAAGTGACTGTCGTACTCTAATAACAGGATGTCCTTCACTGAAGGCTTTGAGAACTAACAACTGCACTCCTCCATCACAGCAATCTGATGATTCAGATGATGATCAGGAACAACAATAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005973 (this species only)
Ubiquitin family	ULD\|UFD\|UBX · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00789 all species →	UBX	UBX domain	Domain	Interproscan
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006553 all species →	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR001012 all species →	Domain	UBX domain	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR051341 all species →	Family	Zyg-11-related ubiquitin ligase adapter protein	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12904 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap7.968.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.