Gene detail

Detailed information of evm.model.Ap7.985 in Astrangia poculata

Genomic Location: Ap7:10955879...10974068
NR annotation: XP_020614942.1, sentrin-specific protease 1-like isoform X2 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap7.985

atgttggcatctttatcgtctttttatgacaatattcgctcgtattctctctctgggaggaaagcaggagacaaacgtcgaagagaaagggaggacgaggatgttattataacggatgttcttcagacaccaccagccaagaggttaaggaatattgaaggagctgcttgcacaaataatagtaacagccctatcaagagtttcactgattttgttaagaaagtgaaaacatggtctggtaagtatttctggcagtatgtggtcagaggagaaacccaggatgacggcaagccttctctgagcagagacctcaatgatgctgaggatgaaatggacaaattcagaagtgcgacaaacacaagattaactagtagctctctaaccaatgagaggttaagtcctggcttaacaagaagaccactgactaagagcagaggaccagaaacctcaacaccagcaagatcatattataaggcgaacagacaggggttatcaacatccacaaggcaaagcaagagcatggcagaaagttcttgtagaacctatgatccatccaaatataaagacacttctgacagtacaaaaagatcctacaaagtcagccaatacaagagtggaagagcagcaggatggaacaccccaggaccttcccagtctagcagccgatctgcacagacacccaggagtcaagggcaaaattacaatgctgcggcaaggaaatccccaggggacagtagtagattcttgagcacagcagaaagggttgttcgcctggatgaacgagacagatacagacagctagtggcccagtttaccactatacagacacctgatagcacaggtcaggcgtggaacaaagcaatagatgaaccacttgaagttcaaactgattttcttaccaaaacaaggtcacatgcaaggtcaggaaatggaagtctattatcaccaagatccaacttactaccaccccctgtgtcattcacaaccccagcctcccctccccaatcaccaaccaggctgagagtaatggcatcaccaaggagatctgccaacagatctcacaggaccactccagatgttagtttgtattcaaggccaggtccaactgaagtgtcccctccgagtggtaatctcagatcaagtaggttgctggacacatctgatgtgcacaatccttttgatgaaagttggaccagaaggtggcgagatcttctgtcagatgaaagtttatcaagacaaagggagatttcaagggaggagaagaagctaaaggcaataaaacaaaagcgagaagaagaaacgcaagagcttagagaaaagatacaagaaaggttaagaagagtgagacaagggttcgaggaagaggaagcatcagagggagaggaagaagttgaagaagaaacagatgcctttgttccactcacaagcgaaatggaaagaatggttgacgctgctttagctccaggctatgctgatgatcctcttgttgaaggcttccgagtgactctgaaacgaagtgacttggcaacgcttagtaacctgaactggctcaatgatgagataatcaacttcttttttaaccttctcgtggaaaggagcaatcaacaagggaaagtaaaagtccacgctttcaattcattcttttatcccaaactcatcaagtcaggatatgcaagtcttaaacggtggacaaaaaaggtggatatatttgcgatggatttggttcttgttccagttcatttaggaatgcactggtgtctagcggcgattgatttaaacaaaaaatgtatatcatattatgactcactgaaaggctccaatccacagtgcctgtcagcactgagagattaccttaacagcgagtctctggacaagaaaaaagcgccctttgacatgacgggctggaagacagcgtctccaaaggatataccggagcaattgaatgggtgcgattgcggagttttcgcttgcaagtacgcggaatatttatcaagaaaggcgagcttcaattttgaccagagacacatgccttacttcaggcgccgaatggtatacgagattctgaccaaaaagctcttatgttag

Transcript

evm.model.Ap7.985

ATGTTGGCATCTTTATCGTCTTTTTATGACAATATTCGCTCGTATTCTCTCTCTGGGAGGAAAGCAGGAGACAAACGTCGAAGAGAAAGGGAGGACGAGGATGTTATTATAACGGATGTTCTTCAGACACCACCAGCCAAGAGGTTAAGGAATATTGAAGGAGCTGCTTGCACAAATAATAGTAACAGCCCTATCAAGAGTTTCACTGATTTTGTTAAGAAAGTGAAAACATGGTCTGGTAAGTATTTCTGGCAGTATGTGGTCAGAGGAGAAACCCAGGATGACGGCAAGCCTTCTCTGAGCAGAGACCTCAATGATGCTGAGGATGAAATGGACAAATTCAGAAGTGCGACAAACACAAGATTAACTAGTAGCTCTCTAACCAATGAGAGGTTAAGTCCTGGCTTAACAAGAAGACCACTGACTAAGAGCAGAGGACCAGAAACCTCAACACCAGCAAGATCATATTATAAGGCGAACAGACAGGGGTTATCAACATCCACAAGGCAAAGCAAGAGCATGGCAGAAAGTTCTTGTAGAACCTATGATCCATCCAAATATAAAGACACTTCTGACAGTACAAAAAGATCCTACAAAGTCAGCCAATACAAGAGTGGAAGAGCAGCAGGATGGAACACCCCAGGACCTTCCCAGTCTAGCAGCCGATCTGCACAGACACCCAGGAGTCAAGGGCAAAATTACAATGCTGCGGCAAGGAAATCCCCAGGGGACAGTAGTAGATTCTTGAGCACAGCAGAAAGGGTTGTTCGCCTGGATGAACGAGACAGATACAGACAGCTAGTGGCCCAGTTTACCACTATACAGACACCTGATAGCACAGGTCAGGCGTGGAACAAAGCAATAGATGAACCACTTGAAGTTCAAACTGATTTTCTTACCAAAACAAGGTCACATGCAAGGTCAGGAAATGGAAGTCTATTATCACCAAGATCCAACTTACTACCACCCCCTGTGTCATTCACAACCCCAGCCTCCCCTCCCCAATCACCAACCAGGCTGAGAGTAATGGCATCACCAAGGAGATCTGCCAACAGATCTCACAGGACCACTCCAGATGTTAGTTTGTATTCAAGGCCAGGTCCAACTGAAGTGTCCCCTCCGAGTGGTAATCTCAGATCAAGTAGGTTGCTGGACACATCTGATGTGCACAATCCTTTTGATGAAAGTTGGACCAGAAGGTGGCGAGATCTTCTGTCAGATGAAAGTTTATCAAGACAAAGGGAGATTTCAAGGGAGGAGAAGAAGCTAAAGGCAATAAAACAAAAGCGAGAAGAAGAAACGCAAGAGCTTAGAGAAAAGATACAAGAAAGGTTAAGAAGAGTGAGACAAGGGTTCGAGGAAGAGGAAGCATCAGAGGGAGAGGAAGAAGTTGAAGAAGAAACAGATGCCTTTGTTCCACTCACAAGCGAAATGGAAAGAATGGTTGACGCTGCTTTAGCTCCAGGCTATGCTGATGATCCTCTTGTTGAAGGCTTCCGAGTGACTCTGAAACGAAGTGACTTGGCAACGCTTAGTAACCTGAACTGGCTCAATGATGAGATAATCAACTTCTTTTTTAACCTTCTCGTGGAAAGGAGCAATCAACAAGGGAAAGTAAAAGTCCACGCTTTCAATTCATTCTTTTATCCCAAACTCATCAAGTCAGGATATGCAAGTCTTAAACGGTGGACAAAAAAGGTGGATATATTTGCGATGGATTTGGTTCTTGTTCCAGTTCATTTAGGAATGCACTGGTGTCTAGCGGCGATTGATTTAAACAAAAAATGTATATCATATTATGACTCACTGAAAGGCTCCAATCCACAGTGCCTGTCAGCACTGAGAGATTACCTTAACAGCGAGTCTCTGGACAAGAAAAAAGCGCCCTTTGACATGACGGGCTGGAAGACAGCGTCTCCAAAGGATATACCGGAGCAATTGAATGGGTGCGATTGCGGAGTTTTCGCTTGCAAGTACGCGGAATATTTATCAAGAAAGGCGAGCTTCAATTTTGACCAGAGACACATGCCTTACTTCAGGCGCCGAATGGTATACGAGATTCTGACCAAAAAGCTCTTATGTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9P0U3	Sentrin-specific protease 1 OS=Homo sapiens OX=9606 GN=SENP1 PE=1 SV=2
Q5RBB1	Sentrin-specific protease 1 OS=Pongo abelii OX=9601 GN=SENP1 PE=2 SV=1
P59110	Sentrin-specific protease 1 OS=Mus musculus OX=10090 GN=Senp1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001960 (this species only)
Ubiquitin family	DUB\|ULP\|ULP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02902 all species →	Peptidase_C48	Ulp1 protease family, C-terminal catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003653 all species →	Domain	Ulp1 protease family, C-terminal catalytic domain	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12606 all species →	SENTRIN/SUMO-SPECIFIC PROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016926 all species →	Biological Process	protein desumoylation	Interproscan
GO:0016929 all species →	Molecular Function	deSUMOylase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08592	SENP1; sentrin-specific protease 1	EC:3.4.22.68	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.