Gene detail

Detailed information of evm.model.Ap8.102 in Astrangia poculata

Genomic Location: Ap8:1059779...1067503
NR annotation: KAJ7376998.1, hypothetical protein OS493_031271 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.102

atgtacctagtttacatttttgtgctgtgggttagctcgatcgcactggtgtcgtgcgaaaattgcgagcctgttactgtaagatcatgctcaaatgcagggtacagattcactgcacgatttcccgatgtggacggcacaccctatcaagattttcatgctgccagtctgaacctttacatcccgctattggagtcgtgttcaccagattgggccagtacgatcttatgttcgctgtacctgccgaaatgcgaagaaggacgcagcacagcatggcgcccttgccgtaaagtttgcacgcagtttgtttctgaatgtcaaagtactcttcgcactgcagggctcgctgggatgtttaccgtgctatgtgatttgctacctgatggagatgggcaatcaaaagaatgtttttatccctccaactttaaggacacttcttcaggaggaccagtaacaaatgcgtgctatgatgttgtggaccagaaatgcaagaatgacctccactacagcaaaacattaattccaacaagtttacaaaaagcagaagatacgatattcaaagtggtcatcgacagtaactgctcaaaggagttggaaaagtttatctgctacacgcagtttccaccttgctatccaaaccgtccaagtgtgacatatataccctgcaaatcgctctgcgatacaatcaacaagaaatgctggaaacagttcgtagattatggtctaccattgccgcactgtgattatgtttatcccagggatgataatgcaacaggcctctgtgaagtgaaacagtggcctgctttgtggcctaagaaattcagaccatccccacccccccttggtacctgtgaagaactcactgtgaagtcatgccgcaatgctggatacaaatacactgcaaaatatcctaaatttggcgagaagtccttccaagagcataaaggagaactactggacatccttattccaccattaacatgctctccttacagcagcttaattctttgttccctgtttcttccaaaatgtgttcctggaagtggtacccccatgctgccatgccgtcaagtctgcttggattttactgacaagtgcaaggttgaactgcagttggcgtcgactctggggatgaccatagcactgtgtgacctgctcccagtgtatgatgggactccaaacaagtgcatcatgccaaagaaattcctgattacctccactacacagctgatctctgtcagggatgtctgctacccagtgacatctaccaagtgttctaaagacctccactatgacaaaacttttctaccaacagaggaccaaaaagcctcggaactcaccctactacagcctattatagactcggcttgctcgcctgatattgagaaatatctgtgccaaacccgtatgcccccatgcactgcagatatttctatggtccacatgccgtgcagggagttctgtaagagaatcactcgtgactgcggtgatgttttgaaggctcacagtatccctgctctgcactgtgattacttatttccaccaggagacagctctaatggactgtgtgacttgaagcgctggcctgtcccatggccgtggaaaatccctgaaccgaatcctcctgtttcagatggtcctactaattgtgttcctctgaaagccaaagcttgtgtaggcgctggttatgacatgactgcagacttcccaccaatcgatggcaagtcatatcaacaagtcaaagggaaagatctggagtttttcctaaactttttaaacctctgttcaccgtacggcaagacaattatgtgttcattctacatgccaaagtgtgtagcaggagtgcagaaacctgttcttccttgtcggagtgtttgtttggagtttgtaagcaagtgtcagggacttctggcgctggcttcacatgctggcatgtttagagccctctgtgatctgttgccacagcaggattatttccccaacacttgttttatacctgatggatttaaaccaagcactgcttctactgtcgctagacgtggtggagagtgcagccaagttgtggaaccaaagttctgccccaaagatctgcattataatcagacgtttgtgctggagaaagatcagaccagcaaaacagtactgcagagcgtcctgaactccaaatgttcacctgaattggaaaagtacctgtgttataccacagtccctccatgtaagccgaacgatctgtccgtgtatctgccttgcagatctgtttgtgagcaggtcaggagagattgtggtggggaattcaagaaaaaccggattcctttgccagactgctctgtgatatatccagaagatgatgaccctaaaaacaaaggattgtgtcaccttactgtgtttccagttgcttggccttctaagagagcaaaagccgtggaggaacaacgtcagacagcgtctaacaaaggtggactaatagccggtattgtcatcctactgggtgtgttaattgcagctgtgataataggcgtgatgtatttccgctggcgccgcggtacaaagcagtttacttcacagcggtttgagaacgtggagcacgaggacacgaggaccgagtccactgcatga

Transcript

evm.model.Ap8.102

ATGTACCTAGTTTACATTTTTGTGCTGTGGGTTAGCTCGATCGCACTGGTGTCGTGCGAAAATTGCGAGCCTGTTACTGTAAGATCATGCTCAAATGCAGGGTACAGATTCACTGCACGATTTCCCGATGTGGACGGCACACCCTATCAAGATTTTCATGCTGCCAGTCTGAACCTTTACATCCCGCTATTGGAGTCGTGTTCACCAGATTGGGCCAGTACGATCTTATGTTCGCTGTACCTGCCGAAATGCGAAGAAGGACGCAGCACAGCATGGCGCCCTTGCCGTAAAGTTTGCACGCAGTTTGTTTCTGAATGTCAAAGTACTCTTCGCACTGCAGGGCTCGCTGGGATGTTTACCGTGCTATGTGATTTGCTACCTGATGGAGATGGGCAATCAAAAGAATGTTTTTATCCCTCCAACTTTAAGGACACTTCTTCAGGAGGACCAGTAACAAATGCGTGCTATGATGTTGTGGACCAGAAATGCAAGAATGACCTCCACTACAGCAAAACATTAATTCCAACAAGTTTACAAAAAGCAGAAGATACGATATTCAAAGTGGTCATCGACAGTAACTGCTCAAAGGAGTTGGAAAAGTTTATCTGCTACACGCAGTTTCCACCTTGCTATCCAAACCGTCCAAGTGTGACATATATACCCTGCAAATCGCTCTGCGATACAATCAACAAGAAATGCTGGAAACAGTTCGTAGATTATGGTCTACCATTGCCGCACTGTGATTATGTTTATCCCAGGGATGATAATGCAACAGGCCTCTGTGAAGTGAAACAGTGGCCTGCTTTGTGGCCTAAGAAATTCAGACCATCCCCACCCCCCCTTGGTACCTGTGAAGAACTCACTGTGAAGTCATGCCGCAATGCTGGATACAAATACACTGCAAAATATCCTAAATTTGGCGAGAAGTCCTTCCAAGAGCATAAAGGAGAACTACTGGACATCCTTATTCCACCATTAACATGCTCTCCTTACAGCAGCTTAATTCTTTGTTCCCTGTTTCTTCCAAAATGTGTTCCTGGAAGTGGTACCCCCATGCTGCCATGCCGTCAAGTCTGCTTGGATTTTACTGACAAGTGCAAGGTTGAACTGCAGTTGGCGTCGACTCTGGGGATGACCATAGCACTGTGTGACCTGCTCCCAGTGTATGATGGGACTCCAAACAAGTGCATCATGCCAAAGAAATTCCTGATTACCTCCACTACACAGCTGATCTCTGTCAGGGATGTCTGCTACCCAGTGACATCTACCAAGTGTTCTAAAGACCTCCACTATGACAAAACTTTTCTACCAACAGAGGACCAAAAAGCCTCGGAACTCACCCTACTACAGCCTATTATAGACTCGGCTTGCTCGCCTGATATTGAGAAATATCTGTGCCAAACCCGTATGCCCCCATGCACTGCAGATATTTCTATGGTCCACATGCCGTGCAGGGAGTTCTGTAAGAGAATCACTCGTGACTGCGGTGATGTTTTGAAGGCTCACAGTATCCCTGCTCTGCACTGTGATTACTTATTTCCACCAGGAGACAGCTCTAATGGACTGTGTGACTTGAAGCGCTGGCCTGTCCCATGGCCGTGGAAAATCCCTGAACCGAATCCTCCTGTTTCAGATGGTCCTACTAATTGTGTTCCTCTGAAAGCCAAAGCTTGTGTAGGCGCTGGTTATGACATGACTGCAGACTTCCCACCAATCGATGGCAAGTCATATCAACAAGTCAAAGGGAAAGATCTGGAGTTTTTCCTAAACTTTTTAAACCTCTGTTCACCGTACGGCAAGACAATTATGTGTTCATTCTACATGCCAAAGTGTGTAGCAGGAGTGCAGAAACCTGTTCTTCCTTGTCGGAGTGTTTGTTTGGAGTTTGTAAGCAAGTGTCAGGGACTTCTGGCGCTGGCTTCACATGCTGGCATGTTTAGAGCCCTCTGTGATCTGTTGCCACAGCAGGATTATTTCCCCAACACTTGTTTTATACCTGATGGATTTAAACCAAGCACTGCTTCTACTGTCGCTAGACGTGGTGGAGAGTGCAGCCAAGTTGTGGAACCAAAGTTCTGCCCCAAAGATCTGCATTATAATCAGACGTTTGTGCTGGAGAAAGATCAGACCAGCAAAACAGTACTGCAGAGCGTCCTGAACTCCAAATGTTCACCTGAATTGGAAAAGTACCTGTGTTATACCACAGTCCCTCCATGTAAGCCGAACGATCTGTCCGTGTATCTGCCTTGCAGATCTGTTTGTGAGCAGGTCAGGAGAGATTGTGGTGGGGAATTCAAGAAAAACCGGATTCCTTTGCCAGACTGCTCTGTGATATATCCAGAAGATGATGACCCTAAAAACAAAGGATTGTGTCACCTTACTGTGTTTCCAGTTGCTTGGCCTTCTAAGAGAGCAAAAGCCGTGGAGGAACAACGTCAGACAGCGTCTAACAAAGGTGGACTAATAGCCGGTATTGTCATCCTACTGGGTGTGTTAATTGCAGCTGTGATAATAGGCGTGATGTATTTCCGCTGGCGCCGCGGTACAAAGCAGTTTACTTCACAGCGGTTTGAGAACGTGGAGCACGAGGACACGAGGACCGAGTCCACTGCATGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010580 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01392 all species →	Fz	Fz domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036790 all species →	Homologous_superfamily	Frizzled cysteine-rich domain superfamily	Interproscan
IPR020067 all species →	Domain	Frizzled domain	Interproscan
IPR015526 all species →	Family	Frizzled/secreted frizzled-related protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11309 all species →	FRIZZLED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005113 all species →	Molecular Function	patched binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0007224 all species →	Biological Process	smoothened signaling pathway	Interproscan
GO:0007389 all species →	Biological Process	pattern specification process	Interproscan
GO:0007417 all species →	Biological Process	central nervous system development	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0030425 all species →	Cellular Component	dendrite	Interproscan
GO:0071679 all species →	Biological Process	commissural neuron axon guidance	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap8.102.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.