Gene detail

Detailed information of evm.model.Ap8.1172 in Astrangia poculata

Genomic Location: Ap8:12964085...12976223
NR annotation: XP_020604758.1, excitatory amino acid transporter 1-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O57321	Excitatory amino acid transporter 1 OS=Ambystoma tigrinum OX=8305 GN=SLC1A3 PE=1 SV=1
P43006	Excitatory amino acid transporter 2 OS=Mus musculus OX=10090 GN=Slc1a2 PE=1 SV=1
P31596	Excitatory amino acid transporter 2 OS=Rattus norvegicus OX=10116 GN=Slc1a2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000461 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00375 all species →	SDF	Sodium:dicarboxylate symporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036458 all species →	Homologous_superfamily	Sodium:dicarboxylate symporter superfamily	Interproscan
IPR050746 all species →	Family	Dicarboxylate/Amino Acid:Cation Symporter	Interproscan
IPR001991 all species →	Family	Sodium:dicarboxylate symporter	Interproscan
IPR018107 all species →	Conserved_site	Sodium:dicarboxylate symporter, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11958 all species →	SODIUM/DICARBOXYLATE SYMPORTER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015293 all species →	Molecular Function	symporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005313 all species →	Molecular Function	L-glutamate transmembrane transporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015175 all species →	Molecular Function	neutral L-amino acid transmembrane transporter activity	Interproscan
GO:0015501 all species →	Molecular Function	glutamate:sodium symporter activity	Interproscan
GO:0015813 all species →	Biological Process	L-glutamate transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05612	SLC1A1, EAAT3; solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter), member 1	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.