Gene detail

Detailed information of evm.model.Ap8.1184 in Astrangia poculata

Genomic Location: Ap8:13035706...13038270
NR annotation: CAB4010396.1, Retrovirus-related Pol poly from transposon [Paramuricea clavata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.1184

atgtatgttagtcacctaacaccaaaccaacatgctaaagttgcaaaattggtgggaaagagatgtatggttcagtgtgttatgaacaatgttcaaactgaagcattatgggacactggtgcccaagtttctattgtttccaaggattggattgctgagaacctgcctacagctgagagtcgtcaaatggatgaactgcttaatgacgaaggacttgatctgaaagcagctaatggtacagaaatcccatatgaagaatggattgaagtttctttcaaactaatgacctcagatgacaaacatggtatgtcagtacccttcctgatctcaacagaagctatggatcaccctattattggatacaatgtaattgaagaaattgtgagaaaccctgttagtgagccaccaaaccattgtgaagagactttggtcaatgccttgagtttaagccttccaaatgcaaagcaggagaatgttaaagctttgattggtctcattaggactaacaccccaagtgaactgtgtagtgttaaagtaacaaaaagggatgtggtagtttcaaagaatgagacagtagcagtaacttgttctgttaatactggcccaactgaatcaagacttcctgtattgtttgaaccagatgttgaatcaccatggccatcaggacttgaggtccctgaaacattagtaactatcagaggtggtgcttcgtcacgtgtcaaaattcaagtgagaaataccacagaccatgacatcacgttgaggaacaggacagtgttaggcaagctccagctagtcaaatctgtaacaccattagaggtaagaaagagagaggatgaagaaagttcagcagactgtgttccttctagtgacaaatcatcagaggagggagaagagcccgaattgcaatcagatgcaactgtaatgaaggaatgtcaaagtgacactagcaatccacctccagatgttgatttaggagatttgacagaagatcagaaaattgcagtagtgaacatgctcaaagaggaagcagattccttttcgaaagatgatgatgatgtagggagcgcggaaggtctgcaactcaaaattaacctgtccgataatcgtccagtccagaaaaactatacagctattccaaagcctttgtatccagaagtgaagcaacatgttgaagacttactcaaccgtggatgggtgcggaagtcacgctcagcctactcatcgccagtagtttgtgtgcggaaaaaggacggttctttaagactgtgtgtggactttcgtgagctgaacaggcgaacagtaccggaccgacatccgcttcctcgggtacaaacaacaattgagaatcttggagggaacaagtggttttctcttctgaaccaaggaaatgcttatcaccagggatttatcagccctcaatgtcaacacatgactgcatttgtaacaccgtggggcctgtacgagtgggtgagaatcccattcggtctcagaaatgctcctggagaatttcaaaggtttatggaggactgtttggaaggacttagagatgaaatttgtgtgccctatttggatgatgtgattgttttcagcagaagctttgaggagcacattgaaaatgttcggacagttttgaggaggctacgtgaacgaggaataaagctgaaagccagaaaatgcaagatgttcaagaaagaggtcaattacctggggaggattgtttctgctaacggatatcgagtcgatccttcaaatgttaaggcggttttggcactcaaagagactaaccccaaaactgttggcgatgtgagaaaacttctgggcttattggggtattaccaaaaatacatacaggacttctccagaattgcacagcctctcttcgaactcttgaaagcacctgggaccaagaccaacaggcatcctaatcagacagaaagacgtagtcagaaaggaaatgggacacaagcgtcatccaagcatacaattgtttggacacaagaacatcaaggagtgttagagaaacttgtggactgtctggctaacccgccaattcttggttatccagattatgatctcccatttgtactacacacagatgcgtcgaatgaagggctgggagcagtgctttatcagcggcagtctggtaaaatgcgtgtaataggatatggatctagaacactcactcctgcagagaaaaattatcaccttcattctggaaagttagagtttttagctttgaaatgggctatctgtgaacagttcagggactatctgtactacgcaccatcattcacagtttacacggacaacaaccccctgacgtatgttctatcgacagcgaaacttaattcaaccggacatcgctgggtgtcagagctggctgattacaattttgagataaagtacagacctggtaaagcaaacaaagatgctgacaccttgtcaagaattcctttggacatcaaccagtatattcctacttgtacacaagagacttcacaggatgtgatcagtgcaactttgtctggtgtgaaggcacttcagaacggtgatacggtctga

Transcript

evm.model.Ap8.1184

ATGTATGTTAGTCACCTAACACCAAACCAACATGCTAAAGTTGCAAAATTGGTGGGAAAGAGATGTATGGTTCAGTGTGTTATGAACAATGTTCAAACTGAAGCATTATGGGACACTGGTGCCCAAGTTTCTATTGTTTCCAAGGATTGGATTGCTGAGAACCTGCCTACAGCTGAGAGTCGTCAAATGGATGAACTGCTTAATGACGAAGGACTTGATCTGAAAGCAGCTAATGGTACAGAAATCCCATATGAAGAATGGATTGAAGTTTCTTTCAAACTAATGACCTCAGATGACAAACATGGTATGTCAGTACCCTTCCTGATCTCAACAGAAGCTATGGATCACCCTATTATTGGATACAATGTAATTGAAGAAATTGTGAGAAACCCTGTTAGTGAGCCACCAAACCATTGTGAAGAGACTTTGGTCAATGCCTTGAGTTTAAGCCTTCCAAATGCAAAGCAGGAGAATGTTAAAGCTTTGATTGGTCTCATTAGGACTAACACCCCAAGTGAACTGTGTAGTGTTAAAGTAACAAAAAGGGATGTGGTAGTTTCAAAGAATGAGACAGTAGCAGTAACTTGTTCTGTTAATACTGGCCCAACTGAATCAAGACTTCCTGTATTGTTTGAACCAGATGTTGAATCACCATGGCCATCAGGACTTGAGGTCCCTGAAACATTAGTAACTATCAGAGGTGGTGCTTCGTCACGTGTCAAAATTCAAGTGAGAAATACCACAGACCATGACATCACGTTGAGGAACAGGACAGTGTTAGGCAAGCTCCAGCTAGTCAAATCTGTAACACCATTAGAGGTAAGAAAGAGAGAGGATGAAGAAAGTTCAGCAGACTGTGTTCCTTCTAGTGACAAATCATCAGAGGAGGGAGAAGAGCCCGAATTGCAATCAGATGCAACTGTAATGAAGGAATGTCAAAGTGACACTAGCAATCCACCTCCAGATGTTGATTTAGGAGATTTGACAGAAGATCAGAAAATTGCAGTAGTGAACATGCTCAAAGAGGAAGCAGATTCCTTTTCGAAAGATGATGATGATGTAGGGAGCGCGGAAGGTCTGCAACTCAAAATTAACCTGTCCGATAATCGTCCAGTCCAGAAAAACTATACAGCTATTCCAAAGCCTTTGTATCCAGAAGTGAAGCAACATGTTGAAGACTTACTCAACCGTGGATGGGTGCGGAAGTCACGCTCAGCCTACTCATCGCCAGTAGTTTGTGTGCGGAAAAAGGACGGTTCTTTAAGACTGTGTGTGGACTTTCGTGAGCTGAACAGGCGAACAGTACCGGACCGACATCCGCTTCCTCGGGTACAAACAACAATTGAGAATCTTGGAGGGAACAAGTGGTTTTCTCTTCTGAACCAAGGAAATGCTTATCACCAGGGATTTATCAGCCCTCAATGTCAACACATGACTGCATTTGTAACACCGTGGGGCCTGTACGAGTGGGTGAGAATCCCATTCGGTCTCAGAAATGCTCCTGGAGAATTTCAAAGGTTTATGGAGGACTGTTTGGAAGGACTTAGAGATGAAATTTGTGTGCCCTATTTGGATGATGTGATTGTTTTCAGCAGAAGCTTTGAGGAGCACATTGAAAATGTTCGGACAGTTTTGAGGAGGCTACGTGAACGAGGAATAAAGCTGAAAGCCAGAAAATGCAAGATGTTCAAGAAAGAGGTCAATTACCTGGGGAGGATTGTTTCTGCTAACGGATATCGAGTCGATCCTTCAAATGTTAAGGCGGTTTTGGCACTCAAAGAGACTAACCCCAAAACTGTTGGCGATGTGAGAAAACTTCTGGGCTTATTGGGGTATTACCAAAAATACATACAGGACTTCTCCAGAATTGCACAGCCTCTCTTCGAACTCTTGAAAGCACCTGGGACCAAGACCAACAGGCATCCTAATCAGACAGAAAGACGTAGTCAGAAAGGAAATGGGACACAAGCGTCATCCAAGCATACAATTGTTTGGACACAAGAACATCAAGGAGTGTTAGAGAAACTTGTGGACTGTCTGGCTAACCCGCCAATTCTTGGTTATCCAGATTATGATCTCCCATTTGTACTACACACAGATGCGTCGAATGAAGGGCTGGGAGCAGTGCTTTATCAGCGGCAGTCTGGTAAAATGCGTGTAATAGGATATGGATCTAGAACACTCACTCCTGCAGAGAAAAATTATCACCTTCATTCTGGAAAGTTAGAGTTTTTAGCTTTGAAATGGGCTATCTGTGAACAGTTCAGGGACTATCTGTACTACGCACCATCATTCACAGTTTACACGGACAACAACCCCCTGACGTATGTTCTATCGACAGCGAAACTTAATTCAACCGGACATCGCTGGGTGTCAGAGCTGGCTGATTACAATTTTGAGATAAAGTACAGACCTGGTAAAGCAAACAAAGATGCTGACACCTTGTCAAGAATTCCTTTGGACATCAACCAGTATATTCCTACTTGTACACAAGAGACTTCACAGGATGTGATCAGTGCAACTTTGTCTGGTGTGAAGGCACTTCAGAACGGTGATACGGTCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8I7P9	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P20825	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000062 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17917 all species →	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR051320 all species →	Family	Viral Replication and Maturation Polyprotein	Interproscan
IPR041373 all species →	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR001995 all species →	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33064 all species →	POL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap8.1184.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.