Gene detail

Detailed information of evm.model.Ap8.1222 in Astrangia poculata

Genomic Location: Ap8:13426301...13461489
NR annotation: XP_022779099.1, uncharacterized protein LOC111320691 [Stylophora pistillata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.1222

atgtataagggaagacctggttatgacaaagaagaagattcagcagaaatcaacttcttgcccttgatttcttccatcatttcggcgaggggacccaaagcacaagcagcttacgaaagagcgttaatgtttggtaaaacccatgataaacgtgtgaaagtagcggtgattggtcaggaccgggttggcaagacaagtcttggtaggtcactaaaaggcgagccgtttaataaagaggaacccagtactgaaggagtccaaatgaactcccctatcaagaatgctggtgcccaggcatggaaaaatttaacttctcaggcacacacaactgcatttgatcacaagtgtgctgaactgattgctagagaagtaataagggacatattagcagaacagcaatcaagtgcagaggcagatgaaaaacaaactcagaagcggatggtaaatgtaaatgatactggactagcagaaggggacgagaccagcaagaactcagatccacaaaatactacactcgcagaagacagtggcattgaaagaaattccaaagtaccagagcaggatgcgactgcaattgcagaagacaaccttggaaaaagaaagctcactctaccggatcagattgctacactattggaagaatatactcagggtgaaggaatttggcctgtaatctgggattttgctggccaagctgttttccatgccattcatcctattttcatgtcgccggatgccatctacctcttggtcattgacctcaccaaggagttatctgacactgcagtatgccgtgtaaagctagataatcatggtgaggaaaaagtatcatcccatgtgagcgaggacacaaatttagatcacatcttgaggtggatgacattagtacattctttaaagcaatcttctgacagtattgtctcatcgtctgaaacaacatccacccaggcgccaaaaccaccacaaaggactgttatattagtgggtacaaaagctgacatggtagaaggtgaccctatgaaaaaaatggaatcattgctgccaaaaatatttcgaaattccccagaggggttcttaaaacacattgcagaagaaaggtttgttgtagacaacacgcgagctggcaagtcatccgatcaagaatcacgacaaattgctgatttacgaaagaagataatagatttagctaatgaaatgccgcatacaaaacaggtgataccgctgcagtggctctctgtggaacaagaaatgcgtgaagtcagtcaaaatgtgccttacgtgttgaaaacaaagtttagacgagaaattgcggagaaatgttgtacattgaaagaggaagacgaccttgaagagcttcttcacttcttgcatgctcgcggttcaataatctatcatgatcttcctgaaaatccagatggactagtagtactggatccacaatggctcattagaacaatctgtgagataataacagccaaacctaagtggacatacccacctgattttcaggatgattatgacaaccttcagcagaatggagttctttccaaggagttgctagatctagcctgtttaaaactaaacattattgacattgaaaacaacttgattttcatcatgaagaagtttaacttaatttttgagtggaagagtgcagataacacattgatttatgtcgtgccatgcatgctttcaaaatgtaaagaagttaacgaggagacaaataacggtcctgcaccgctttgcctcaggtttgataaaggtggatatgttccgagtggtctttttccaagactggttggcctttttggagtatgggcttcaaaacaatgtactgctgagcaaccggacctgtcttccaatgtcgctttgttttttgttggtgaaaaatataaactgtaccttgtgtgctatacaaatgtcataaagctgtacttttcaagcgaagatgcttttgatcagatggaaacggattcattttgtgtgaagatcgtaagacaactggaaggatcctggacgaaactgaaggcagagtgccattggctgagctcagtacgtttgaatctgtgtgcaagatgtgatctatgttcaacttcggctggcgggagcacgccatgtgtacgacatggcaagcaggaatgtagccatgattactgtgcccattaccttgatttaaggaaaacgcttacttgcaaaaaacagaaatgttacttgcctcagagctttaaggagaaatataagccttggattgaggctctcaaaaccattggaactgaagaactgcctagtccttctgatgagagtcagtgtttacctgtaaagcaaaaaaagccattaccttcaggctcacgcaccaaacctcccaaacaaatcaaagtgatgtctgaacaacttgaaggtaattctgtaaagcagaggggagaaccaccatcacattccagcacagatcgtcgcaaattcaagcctaagcaccgtgcagcttcttgtgctgaagatcagtgttcacctgcaaagcgaaagagaaagataccttcaaacggcaaaactgctaaagaaatcacgtcagatctcactgaaggtccttctgatgagagtcagtgtttacctgtaaagcgaaaaaagccattaccttcaggctcacgcaccaaacctctcaaacaaatcaaagtgatgtgtgaacaacttgaagattcttgtgctgaagatcagtgttcacctgtaaagcgaaagaaaaaggtaccttcaaacggcaaaactgctaaagacatcacgtcagatcccactgaaggtccttctggtgagagtcagtgtttacctgtaaagcgaaaaaagccattgtcttcaggctcacgcaccaaacctctcaaacaaatcaaagtgacgtctgaacaccttgaaggtaatactgttaagcagagtgaaaaaacaccatcacattccagcacaagtcgtcccaaattcaagcgtaagcacctagcagcttcttctgctgaagatcagccttcacctgtaaaacgaaagagaaaggtaccttcaaacggcaaaactgctgaagacatcagtatgacgtcagagcacaccaaagtagtgattaaagaaggtatacctgacgatgaagtcttagaaggattggcacagaaaattcctgataagtggaagaagctagggcgtcggttaaaaattggcgaggaagatcttattgcaattcataaagagaatgaggaatgctgtgaaaaggcatacaacatgttgttaaagtggaaacgagctaacacctctaaagcaacttaccatgtgttatataaggccttgtgtcaccatttggtaaatcgcagagatttagcggaaaaatgttgttgtggtggccatgagtaa

Transcript

evm.model.Ap8.1222

ATGTATAAGGGAAGACCTGGTTATGACAAAGAAGAAGATTCAGCAGAAATCAACTTCTTGCCCTTGATTTCTTCCATCATTTCGGCGAGGGGACCCAAAGCACAAGCAGCTTACGAAAGAGCGTTAATGTTTGGTAAAACCCATGATAAACGTGTGAAAGTAGCGGTGATTGGTCAGGACCGGGTTGGCAAGACAAGTCTTGGTAGGTCACTAAAAGGCGAGCCGTTTAATAAAGAGGAACCCAGTACTGAAGGAGTCCAAATGAACTCCCCTATCAAGAATGCTGGTGCCCAGGCATGGAAAAATTTAACTTCTCAGGCACACACAACTGCATTTGATCACAAGTGTGCTGAACTGATTGCTAGAGAAGTAATAAGGGACATATTAGCAGAACAGCAATCAAGTGCAGAGGCAGATGAAAAACAAACTCAGAAGCGGATGGTAAATGTAAATGATACTGGACTAGCAGAAGGGGACGAGACCAGCAAGAACTCAGATCCACAAAATACTACACTCGCAGAAGACAGTGGCATTGAAAGAAATTCCAAAGTACCAGAGCAGGATGCGACTGCAATTGCAGAAGACAACCTTGGAAAAAGAAAGCTCACTCTACCGGATCAGATTGCTACACTATTGGAAGAATATACTCAGGGTGAAGGAATTTGGCCTGTAATCTGGGATTTTGCTGGCCAAGCTGTTTTCCATGCCATTCATCCTATTTTCATGTCGCCGGATGCCATCTACCTCTTGGTCATTGACCTCACCAAGGAGTTATCTGACACTGCAGTATGCCGTGTAAAGCTAGATAATCATGGTGAGGAAAAAGTATCATCCCATGTGAGCGAGGACACAAATTTAGATCACATCTTGAGGTGGATGACATTAGTACATTCTTTAAAGCAATCTTCTGACAGTATTGTCTCATCGTCTGAAACAACATCCACCCAGGCGCCAAAACCACCACAAAGGACTGTTATATTAGTGGGTACAAAAGCTGACATGGTAGAAGGTGACCCTATGAAAAAAATGGAATCATTGCTGCCAAAAATATTTCGAAATTCCCCAGAGGGGTTCTTAAAACACATTGCAGAAGAAAGGTTTGTTGTAGACAACACGCGAGCTGGCAAGTCATCCGATCAAGAATCACGACAAATTGCTGATTTACGAAAGAAGATAATAGATTTAGCTAATGAAATGCCGCATACAAAACAGGTGATACCGCTGCAGTGGCTCTCTGTGGAACAAGAAATGCGTGAAGTCAGTCAAAATGTGCCTTACGTGTTGAAAACAAAGTTTAGACGAGAAATTGCGGAGAAATGTTGTACATTGAAAGAGGAAGACGACCTTGAAGAGCTTCTTCACTTCTTGCATGCTCGCGGTTCAATAATCTATCATGATCTTCCTGAAAATCCAGATGGACTAGTAGTACTGGATCCACAATGGCTCATTAGAACAATCTGTGAGATAATAACAGCCAAACCTAAGTGGACATACCCACCTGATTTTCAGGATGATTATGACAACCTTCAGCAGAATGGAGTTCTTTCCAAGGAGTTGCTAGATCTAGCCTGTTTAAAACTAAACATTATTGACATTGAAAACAACTTGATTTTCATCATGAAGAAGTTTAACTTAATTTTTGAGTGGAAGAGTGCAGATAACACATTGATTTATGTCGTGCCATGCATGCTTTCAAAATGTAAAGAAGTTAACGAGGAGACAAATAACGGTCCTGCACCGCTTTGCCTCAGGTTTGATAAAGGTGGATATGTTCCGAGTGGTCTTTTTCCAAGACTGGTTGGCCTTTTTGGAGTATGGGCTTCAAAACAATGTACTGCTGAGCAACCGGACCTGTCTTCCAATGTCGCTTTGTTTTTTGTTGGTGAAAAATATAAACTGTACCTTGTGTGCTATACAAATGTCATAAAGCTGTACTTTTCAAGCGAAGATGCTTTTGATCAGATGGAAACGGATTCATTTTGTGTGAAGATCGTAAGACAACTGGAAGGATCCTGGACGAAACTGAAGGCAGAGTGCCATTGGCTGAGCTCAGTACGTTTGAATCTGTGTGCAAGATGTGATCTATGTTCAACTTCGGCTGGCGGGAGCACGCCATGTGTACGACATGGCAAGCAGGAATGTAGCCATGATTACTGTGCCCATTACCTTGATTTAAGGAAAACGCTTACTTGCAAAAAACAGAAATGTTACTTGCCTCAGAGCTTTAAGGAGAAATATAAGCCTTGGATTGAGGCTCTCAAAACCATTGGAACTGAAGAACTGCCTAGTCCTTCTGATGAGAGTCAGTGTTTACCTGTAAAGCAAAAAAAGCCATTACCTTCAGGCTCACGCACCAAACCTCCCAAACAAATCAAAGTGATGTCTGAACAACTTGAAGGTAATTCTGTAAAGCAGAGGGGAGAACCACCATCACATTCCAGCACAGATCGTCGCAAATTCAAGCCTAAGCACCGTGCAGCTTCTTGTGCTGAAGATCAGTGTTCACCTGCAAAGCGAAAGAGAAAGATACCTTCAAACGGCAAAACTGCTAAAGAAATCACGTCAGATCTCACTGAAGGTCCTTCTGATGAGAGTCAGTGTTTACCTGTAAAGCGAAAAAAGCCATTACCTTCAGGCTCACGCACCAAACCTCTCAAACAAATCAAAGTGATGTGTGAACAACTTGAAGATTCTTGTGCTGAAGATCAGTGTTCACCTGTAAAGCGAAAGAAAAAGGTACCTTCAAACGGCAAAACTGCTAAAGACATCACGTCAGATCCCACTGAAGGTCCTTCTGGTGAGAGTCAGTGTTTACCTGTAAAGCGAAAAAAGCCATTGTCTTCAGGCTCACGCACCAAACCTCTCAAACAAATCAAAGTGACGTCTGAACACCTTGAAGGTAATACTGTTAAGCAGAGTGAAAAAACACCATCACATTCCAGCACAAGTCGTCCCAAATTCAAGCGTAAGCACCTAGCAGCTTCTTCTGCTGAAGATCAGCCTTCACCTGTAAAACGAAAGAGAAAGGTACCTTCAAACGGCAAAACTGCTGAAGACATCAGTATGACGTCAGAGCACACCAAAGTAGTGATTAAAGAAGGTATACCTGACGATGAAGTCTTAGAAGGATTGGCACAGAAAATTCCTGATAAGTGGAAGAAGCTAGGGCGTCGGTTAAAAATTGGCGAGGAAGATCTTATTGCAATTCATAAAGAGAATGAGGAATGCTGTGAAAAGGCATACAACATGTTGTTAAAGTGGAAACGAGCTAACACCTCTAAAGCAACTTACCATGTGTTATATAAGGCCTTGTGTCACCATTTGGTAAATCGCAGAGATTTAGCGGAAAAATGTTGTTGTGGTGGCCATGAGTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001166 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531 all species →	Death	Death domain	Domain	Interproscan
PF08477 all species →	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF16095 all species →	COR	C-terminal of Roc, COR, domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR032171 all species →	Domain	C-terminal of Roc (COR) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24073 all species →	DRAB5-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0012505 all species →	Cellular Component	endomembrane system	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap8.1222.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.