Detailed information of evm.model.Ap8.1233 in Astrangia poculata

Genomic Location: Ap8:13623336...13650471
NR annotation: XP_020630791.1, collagen alpha-2(IV) chain-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7SIB3Collagen alpha-2(IV) chain (Fragment) OS=Bos taurus OX=9913 GN=COL4A2 PE=1 SV=1
Q28084Collagen alpha-3(IV) chain (Fragment) OS=Bos taurus OX=9913 GN=COL4A3 PE=1 SV=1
P27393Collagen alpha-2(IV) chain OS=Ascaris suum OX=6253 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001899 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01413
all species →		C4C-terminal tandem repeated domain in type 4 procollagenDomainInterproscan
PF01391
all species →		CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF00092
all species →		VWAvon Willebrand factor type A domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036465
all species →		Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR016187
all species →		Homologous_superfamilyC-type lectin foldInterproscan
IPR001442
all species →		DomainCollagen IV, non-collagenousInterproscan
IPR002035
all species →		Domainvon Willebrand factor, type AInterproscan
IPR008160
all species →		RepeatCollagen triple helix repeatInterproscan
IPR050149
all species →		FamilyCollagen superfamilyInterproscan
IPR036954
all species →		Homologous_superfamilyCollagen IV, non-collagenous domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24023
all species →		COLLAGEN ALPHAInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005201
all species →		Molecular Functionextracellular matrix structural constituentInterproscan
GO:0005581
all species →		Cellular Componentcollagen trimerInterproscan
GO:0005615
all species →		Cellular Componentextracellular spaceInterproscan
GO:0030020
all species →		Molecular Functionextracellular matrix structural constituent conferring tensile strengthInterproscan
GO:0030198
all species →		Biological Processextracellular matrix organizationInterproscan
GO:0031012
all species →		Cellular Componentextracellular matrixInterproscan
GO:0062023
all species →		Cellular Componentcollagen-containing extracellular matrixInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap8.1233.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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