Gene detail

Detailed information of evm.model.Ap8.1235 in Astrangia poculata

Genomic Location: Ap8:13697951...13737184
NR annotation: KAJ7390300.1, collagen [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.1235

atggccaattttggcagtcttctcactgccttgaagccttttgactgtcaaggttgtcaatcttgtattccaaaatgtataggacctaaaggtgcacggggagatagaggaagaacaggacaaactggtccaccaggtttgccaggttttcaagggcctgaaggattaccaggacctcgaggatataagggagacaaaggcgaacttggcccagttggagccaagggaccaagaggaagaattggacaaccaggttttcctggagcaaatggcaatccgggtttaccaggagaagatggacctcgaggtatgatgggtgatcctggctgtaatggaacaaagggtgaaagaggtgtttcaggacaaccaggaactcctggagtcaaaggcgaacagggcttgcctggtagtgcaggaacaaagggtgaaaaaggttctgccattgatgttcttggtcccaagggagaacctggaccagcaggaccagcaggggatccaggtagccgtggtgatcaaggtacaccaggcactcagggaccccctggagagcagggaagtcaaggagagaagggttcaccggggccacaaggagaaagaggtcacccaggtgtagataagcgaggtgaaaagggagaaccaggcccaaagggcattaaaggagaaaaaggaaagcctggaggtatcgcaggtcacactggaacaaatgaatctgtgattacaatacaaggtccaaaaggttcaaaaggagacacgggcaaagatggaggaagaggacagaaaggagagccagggtccgatgcaggtggtggtcttcaaggagaagttgggccaaaaggggaaccgggtgcacagggcgagcagggagatgatggtgagaaaggagacaggggagctactggcgataagggcaaaccaggtccaacgggcgataaaggtgaagttggtgatgttggagtagctggaccccctggaccacaaggagattcaggccaaaaaggcgaaaggggagaaacgggtccccaaggagttggcccacctggtccggatggctctaaaggtggtcaaggcccacaaggttttcctggtgaaaaaggattcaaaggaaatattggaaatcctggtccaaccggtcctccaggcccccctggaccacaaggctctgatggagatccgggccctattggtccgccagggcaaactggaaatccaggtgatgcaggaatgaagggacctcctggtaagcaaggtccacctggaccccctggcccagaaggaaagaaaggtagtcgcggaatctctattcaaggcccccctggtatggacggtagtccaggattacgaggagagtctggtctgcagggtgaccctggatttcctggacctccagggaacagctcacatggacctccaggtctgccaggtcccccaggccaggctggactaccaggggaccaaggacctaagggtgtccaaggattgaaaggtgaagagtgtggcgaatgtcctcctccccccaggggaccctcagggaaccctggcgatattggactccctggtgaagatggagctgtgggatcgccaggtgcaactggacctgaaggagatcctggtgctacaggaagtgacggaagtaacggagatcctggagagccaggtgctcaaggcgaccctggtgaccctggcactcccggggcaaaaggtgaaaaggggcaagttttccgcgtagaaggcgaaaaaggacagaaaggagagcccggccctgagggattttcaggagatcaaggtcctgccggtaaacaaggtgacacaggagaacctgggccccagggaccagaaggacccactggaaaaaagggtgaccgaggcaatgatggcaccaatggatctcctgggtccaagggtgataaaggtgaccgtggaatgaaaggagatcctggacaagttatagcagggccacctggaatagatggaaagaatggaccaaaaggagaaccaggacaaaatggaactgatggaccaaaaggagaaaaaggtaattcatgcttaactgctggacaaataaaaaacgttacaaaaggcgtcaaaggagagccaggcccaccaggcgtacagggagatgtgggagaaagaggaccccaaggggaaacgggtgctaatgggacggcaggagctgcaggagagaaaggagaggcaggtgaaggtagccctggcccagtaggacctacgggaccacaaggcgagactggagcagatggacccaaaggtgaccaaggaccaagaggtgtaaaaggtgacactggcccttctggcccgacaggctctgacggtcctaaaggtgaaaaaggagaacttggaccagcaggtaaccctgggatacctggacttcctggtaaaaatgggccaccaggggaccctgggccaaatggcgaacgtggccaggatggtttgccaggagaacccggcaagaaaggtgctataggccccattggtgttacaggtgaggcaggccaaccagggccgcctggattaccaggtgatgtcggaatgaagggtgtagcaggcgttggaccaccagggccacccggaaatgatggtcctaaaggtcagcctggacagaagggtgagcctggggtgcctggtagagatggagatccaggaagtgatggtgatgtaggaagcaccggtgagaaaggtgatacaggagcccaaggtctgcccggtccacagggtggaaaaggagaccaaggagaggttggtgagccaggtgacattggcgaaaggggatttccaggaattcctgggagccgtggtgaaaaaggtggtcagggagatgaagggccagcaggcaacccaggtcccaagggagaaccaggcatcaagggtgaaattggccctcaaggaagaataggctttccaggacttaagggtgaagaaggtatgaaaggtaaaacaggaccaccaggaaaatcaaatgccacagtcataccaggacctcaaggtgacaagggcaaccgtggccctcctggccaacctggaagaaatggtgcggatggacttccgggagaagcaggagaacttggtcttcctggggatcaagggcccaagggtgagcctggggctcctggtatacaaggccctcctgggggtcccggacagaacggtgcaaaaggagagcaagggatccagggcccagaggggcctgaaggaattaagggtgaaaaaggtgccgaagggccacctggagaacaaggggcccgaggtgaacaaggagagcgtgggaaagaaggaagcaagggtgatgctggaaaccctggtattgggttgcctggtgaggaaggcgctgttggtgaagatggtagaccaggagagagaggacaagatggagagaaaggagaaagaggatcagatgggtcgccaggaccgccggggccgattggaccaccaggagagacaggtggccaaggcccaaaaggcgataaaggaaccacaggtcaaacaacagttgttgctggacaaaagggcgaacctggtattaatggaagcaatggactggatggtggcgatggacaaaagggtgagagaggcccgccaggagcaccaggagatgctggagcttcaggagccataggtgaaaaaggttcagctggtgatgctgggccgcgcggcagtcctggcgaggatggagcggatggtgaacccggagtggctggagacaaaggagaaaaaggttcgccgggccggactggacaggcaggcgaacctggagttgaaggcttaccgggagtgcctggtgaaaagggtgatacagggccgtctggcgagtctggagcagagggaaaacctggcctgaaaggagaacaaggacctccagggcctgagggaactcctggcgacactggaatagaaggtagcctgggtgaaaaaggtgaaccaggcccaccaggttcggaggggagtaagggagaaagaggacaggttggagccagtggaccacctgggccgaaaggcgaacctggtgacacgggtcttcaaggtgacgtaggtgatcctggcccccagggggagccgggtaatgatggcccggcgggagaaaagggaaatgacggatttcctggagttcttggtgagaaaggagaccctggatcagacggaccgcaaggatcaaagggtgaaccaggactcggaattgggtctcctggtgagaaaggtgaacgtggtgatgttggtatccctggacttgatggtgaaaagggcgagacgggacctgcgggacctatcggacccgagggaccaagaggcgaggctggcgatccgggaattaatggagtgcctggaccaaaaggtgataagggcgtggacggattcgctggtctaattggaccccctggtgatcaaggacccataggtgccagtgggctgaccgggttaccaggacccccgggtgaagcagattttgggttctatgtggtacggcacagccagacagcggaactgccggattgcccgggggatagtgtgtcactgtgggacggatacagtttgctttacgtgcagggtaacgaacgagcgcacggccaagatttgggtcaacccggctcatgtctgccgaaattcagcaccatgcccttcctgttttgtaacctgaatgaaaactgcaacctggcctcgcgcaatgactacaccttctggctgtccaccacagagcccattcccatgatgcctgttcaggatgcagacgtcaagcccttcattagtcgctgccgcgtgtgcgaggcgcccgccatggtcatggcgcttcacagccaaagcatgatcgaaccagactgtcctgaagactggaaacctctgtggagaggctacagcttccttatgcacacaagtgccggcaacgatggggcaggacagcttctttcgtccccaggctcctgtctggaggacttccgtaccagtcctttcatagaatgtcacggtcgcgggacatgccactattacggtagcacgtacagcttctggctaacaactgtcagcgacgaagaacagttccgaacaccaacatcccggactattaaatcaggaaaccagcgtgagcatgttagccgctgtaccgtctgcatgaaaaaggtctataacaacaacggcaatggaaacggaaatggtattgataacggaggagatcccatcacagaccttggcaatttgccgaactaa

Transcript

evm.model.Ap8.1235

ATGGCCAATTTTGGCAGTCTTCTCACTGCCTTGAAGCCTTTTGACTGTCAAGGTTGTCAATCTTGTATTCCAAAATGTATAGGACCTAAAGGTGCACGGGGAGATAGAGGAAGAACAGGACAAACTGGTCCACCAGGTTTGCCAGGTTTTCAAGGGCCTGAAGGATTACCAGGACCTCGAGGATATAAGGGAGACAAAGGCGAACTTGGCCCAGTTGGAGCCAAGGGACCAAGAGGAAGAATTGGACAACCAGGTTTTCCTGGAGCAAATGGCAATCCGGGTTTACCAGGAGAAGATGGACCTCGAGGTATGATGGGTGATCCTGGCTGTAATGGAACAAAGGGTGAAAGAGGTGTTTCAGGACAACCAGGAACTCCTGGAGTCAAAGGCGAACAGGGCTTGCCTGGTAGTGCAGGAACAAAGGGTGAAAAAGGTTCTGCCATTGATGTTCTTGGTCCCAAGGGAGAACCTGGACCAGCAGGACCAGCAGGGGATCCAGGTAGCCGTGGTGATCAAGGTACACCAGGCACTCAGGGACCCCCTGGAGAGCAGGGAAGTCAAGGAGAGAAGGGTTCACCGGGGCCACAAGGAGAAAGAGGTCACCCAGGTGTAGATAAGCGAGGTGAAAAGGGAGAACCAGGCCCAAAGGGCATTAAAGGAGAAAAAGGAAAGCCTGGAGGTATCGCAGGTCACACTGGAACAAATGAATCTGTGATTACAATACAAGGTCCAAAAGGTTCAAAAGGAGACACGGGCAAAGATGGAGGAAGAGGACAGAAAGGAGAGCCAGGGTCCGATGCAGGTGGTGGTCTTCAAGGAGAAGTTGGGCCAAAAGGGGAACCGGGTGCACAGGGCGAGCAGGGAGATGATGGTGAGAAAGGAGACAGGGGAGCTACTGGCGATAAGGGCAAACCAGGTCCAACGGGCGATAAAGGTGAAGTTGGTGATGTTGGAGTAGCTGGACCCCCTGGACCACAAGGAGATTCAGGCCAAAAAGGCGAAAGGGGAGAAACGGGTCCCCAAGGAGTTGGCCCACCTGGTCCGGATGGCTCTAAAGGTGGTCAAGGCCCACAAGGTTTTCCTGGTGAAAAAGGATTCAAAGGAAATATTGGAAATCCTGGTCCAACCGGTCCTCCAGGCCCCCCTGGACCACAAGGCTCTGATGGAGATCCGGGCCCTATTGGTCCGCCAGGGCAAACTGGAAATCCAGGTGATGCAGGAATGAAGGGACCTCCTGGTAAGCAAGGTCCACCTGGACCCCCTGGCCCAGAAGGAAAGAAAGGTAGTCGCGGAATCTCTATTCAAGGCCCCCCTGGTATGGACGGTAGTCCAGGATTACGAGGAGAGTCTGGTCTGCAGGGTGACCCTGGATTTCCTGGACCTCCAGGGAACAGCTCACATGGACCTCCAGGTCTGCCAGGTCCCCCAGGCCAGGCTGGACTACCAGGGGACCAAGGACCTAAGGGTGTCCAAGGATTGAAAGGTGAAGAGTGTGGCGAATGTCCTCCTCCCCCCAGGGGACCCTCAGGGAACCCTGGCGATATTGGACTCCCTGGTGAAGATGGAGCTGTGGGATCGCCAGGTGCAACTGGACCTGAAGGAGATCCTGGTGCTACAGGAAGTGACGGAAGTAACGGAGATCCTGGAGAGCCAGGTGCTCAAGGCGACCCTGGTGACCCTGGCACTCCCGGGGCAAAAGGTGAAAAGGGGCAAGTTTTCCGCGTAGAAGGCGAAAAAGGACAGAAAGGAGAGCCCGGCCCTGAGGGATTTTCAGGAGATCAAGGTCCTGCCGGTAAACAAGGTGACACAGGAGAACCTGGGCCCCAGGGACCAGAAGGACCCACTGGAAAAAAGGGTGACCGAGGCAATGATGGCACCAATGGATCTCCTGGGTCCAAGGGTGATAAAGGTGACCGTGGAATGAAAGGAGATCCTGGACAAGTTATAGCAGGGCCACCTGGAATAGATGGAAAGAATGGACCAAAAGGAGAACCAGGACAAAATGGAACTGATGGACCAAAAGGAGAAAAAGGTAATTCATGCTTAACTGCTGGACAAATAAAAAACGTTACAAAAGGCGTCAAAGGAGAGCCAGGCCCACCAGGCGTACAGGGAGATGTGGGAGAAAGAGGACCCCAAGGGGAAACGGGTGCTAATGGGACGGCAGGAGCTGCAGGAGAGAAAGGAGAGGCAGGTGAAGGTAGCCCTGGCCCAGTAGGACCTACGGGACCACAAGGCGAGACTGGAGCAGATGGACCCAAAGGTGACCAAGGACCAAGAGGTGTAAAAGGTGACACTGGCCCTTCTGGCCCGACAGGCTCTGACGGTCCTAAAGGTGAAAAAGGAGAACTTGGACCAGCAGGTAACCCTGGGATACCTGGACTTCCTGGTAAAAATGGGCCACCAGGGGACCCTGGGCCAAATGGCGAACGTGGCCAGGATGGTTTGCCAGGAGAACCCGGCAAGAAAGGTGCTATAGGCCCCATTGGTGTTACAGGTGAGGCAGGCCAACCAGGGCCGCCTGGATTACCAGGTGATGTCGGAATGAAGGGTGTAGCAGGCGTTGGACCACCAGGGCCACCCGGAAATGATGGTCCTAAAGGTCAGCCTGGACAGAAGGGTGAGCCTGGGGTGCCTGGTAGAGATGGAGATCCAGGAAGTGATGGTGATGTAGGAAGCACCGGTGAGAAAGGTGATACAGGAGCCCAAGGTCTGCCCGGTCCACAGGGTGGAAAAGGAGACCAAGGAGAGGTTGGTGAGCCAGGTGACATTGGCGAAAGGGGATTTCCAGGAATTCCTGGGAGCCGTGGTGAAAAAGGTGGTCAGGGAGATGAAGGGCCAGCAGGCAACCCAGGTCCCAAGGGAGAACCAGGCATCAAGGGTGAAATTGGCCCTCAAGGAAGAATAGGCTTTCCAGGACTTAAGGGTGAAGAAGGTATGAAAGGTAAAACAGGACCACCAGGAAAATCAAATGCCACAGTCATACCAGGACCTCAAGGTGACAAGGGCAACCGTGGCCCTCCTGGCCAACCTGGAAGAAATGGTGCGGATGGACTTCCGGGAGAAGCAGGAGAACTTGGTCTTCCTGGGGATCAAGGGCCCAAGGGTGAGCCTGGGGCTCCTGGTATACAAGGCCCTCCTGGGGGTCCCGGACAGAACGGTGCAAAAGGAGAGCAAGGGATCCAGGGCCCAGAGGGGCCTGAAGGAATTAAGGGTGAAAAAGGTGCCGAAGGGCCACCTGGAGAACAAGGGGCCCGAGGTGAACAAGGAGAGCGTGGGAAAGAAGGAAGCAAGGGTGATGCTGGAAACCCTGGTATTGGGTTGCCTGGTGAGGAAGGCGCTGTTGGTGAAGATGGTAGACCAGGAGAGAGAGGACAAGATGGAGAGAAAGGAGAAAGAGGATCAGATGGGTCGCCAGGACCGCCGGGGCCGATTGGACCACCAGGAGAGACAGGTGGCCAAGGCCCAAAAGGCGATAAAGGAACCACAGGTCAAACAACAGTTGTTGCTGGACAAAAGGGCGAACCTGGTATTAATGGAAGCAATGGACTGGATGGTGGCGATGGACAAAAGGGTGAGAGAGGCCCGCCAGGAGCACCAGGAGATGCTGGAGCTTCAGGAGCCATAGGTGAAAAAGGTTCAGCTGGTGATGCTGGGCCGCGCGGCAGTCCTGGCGAGGATGGAGCGGATGGTGAACCCGGAGTGGCTGGAGACAAAGGAGAAAAAGGTTCGCCGGGCCGGACTGGACAGGCAGGCGAACCTGGAGTTGAAGGCTTACCGGGAGTGCCTGGTGAAAAGGGTGATACAGGGCCGTCTGGCGAGTCTGGAGCAGAGGGAAAACCTGGCCTGAAAGGAGAACAAGGACCTCCAGGGCCTGAGGGAACTCCTGGCGACACTGGAATAGAAGGTAGCCTGGGTGAAAAAGGTGAACCAGGCCCACCAGGTTCGGAGGGGAGTAAGGGAGAAAGAGGACAGGTTGGAGCCAGTGGACCACCTGGGCCGAAAGGCGAACCTGGTGACACGGGTCTTCAAGGTGACGTAGGTGATCCTGGCCCCCAGGGGGAGCCGGGTAATGATGGCCCGGCGGGAGAAAAGGGAAATGACGGATTTCCTGGAGTTCTTGGTGAGAAAGGAGACCCTGGATCAGACGGACCGCAAGGATCAAAGGGTGAACCAGGACTCGGAATTGGGTCTCCTGGTGAGAAAGGTGAACGTGGTGATGTTGGTATCCCTGGACTTGATGGTGAAAAGGGCGAGACGGGACCTGCGGGACCTATCGGACCCGAGGGACCAAGAGGCGAGGCTGGCGATCCGGGAATTAATGGAGTGCCTGGACCAAAAGGTGATAAGGGCGTGGACGGATTCGCTGGTCTAATTGGACCCCCTGGTGATCAAGGACCCATAGGTGCCAGTGGGCTGACCGGGTTACCAGGACCCCCGGGTGAAGCAGATTTTGGGTTCTATGTGGTACGGCACAGCCAGACAGCGGAACTGCCGGATTGCCCGGGGGATAGTGTGTCACTGTGGGACGGATACAGTTTGCTTTACGTGCAGGGTAACGAACGAGCGCACGGCCAAGATTTGGGTCAACCCGGCTCATGTCTGCCGAAATTCAGCACCATGCCCTTCCTGTTTTGTAACCTGAATGAAAACTGCAACCTGGCCTCGCGCAATGACTACACCTTCTGGCTGTCCACCACAGAGCCCATTCCCATGATGCCTGTTCAGGATGCAGACGTCAAGCCCTTCATTAGTCGCTGCCGCGTGTGCGAGGCGCCCGCCATGGTCATGGCGCTTCACAGCCAAAGCATGATCGAACCAGACTGTCCTGAAGACTGGAAACCTCTGTGGAGAGGCTACAGCTTCCTTATGCACACAAGTGCCGGCAACGATGGGGCAGGACAGCTTCTTTCGTCCCCAGGCTCCTGTCTGGAGGACTTCCGTACCAGTCCTTTCATAGAATGTCACGGTCGCGGGACATGCCACTATTACGGTAGCACGTACAGCTTCTGGCTAACAACTGTCAGCGACGAAGAACAGTTCCGAACACCAACATCCCGGACTATTAAATCAGGAAACCAGCGTGAGCATGTTAGCCGCTGTACCGTCTGCATGAAAAAGGTCTATAACAACAACGGCAATGGAAACGGAAATGGTATTGATAACGGAGGAGATCCCATCACAGACCTTGGCAATTTGCCGAACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7SIB3	Collagen alpha-2(IV) chain (Fragment) OS=Bos taurus OX=9913 GN=COL4A2 PE=1 SV=1
P02462	Collagen alpha-1(IV) chain OS=Homo sapiens OX=9606 GN=COL4A1 PE=1 SV=4
Q7SIB2	Collagen alpha-1(IV) chain OS=Bos taurus OX=9913 GN=COL4A1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001899 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01391 all species →	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF01413 all species →	C4	C-terminal tandem repeated domain in type 4 procollagen	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050149 all species →	Family	Collagen superfamily	Interproscan
IPR036954 all species →	Homologous_superfamily	Collagen IV, non-collagenous domain superfamily	Interproscan
IPR008160 all species →	Repeat	Collagen triple helix repeat	Interproscan
IPR001442 all species →	Domain	Collagen IV, non-collagenous	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24023 all species →	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0030020 all species →	Molecular Function	extracellular matrix structural constituent conferring tensile strength	Interproscan
GO:0030198 all species →	Biological Process	extracellular matrix organization	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan
GO:0005201 all species →	Molecular Function	extracellular matrix structural constituent	Interproscan
GO:0005581 all species →	Cellular Component	collagen trimer	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06237	COL4A; collagen type IV alpha	-	Glycosaminoglycan binding proteins	ko00536	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.