Gene detail

Detailed information of evm.model.Ap8.1250.1.5f15e76a in Astrangia poculata

Genomic Location: Ap8:13894364...13918389
NR annotation: XP_020630443.1, F-box/LRR-repeat protein 18-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.1250.1.5f15e76a

atggagtcacttccagaagaaatgctgtttgcaatatttcaaaatcttgacccgttagaacttatatacttatcaagggtcaaccgacgctggcacaaccttgccctaaatcctcgactacacagatttgtggactttcagcagaagaagcacctttcctcctcttcaatttgctattacatcagcaagttcaaacactcgctgcaagagttgaatctgcaagaatgttactggctgaaaggcggtgctctttcttgtgcactacaaaagtgcagaaaattgacatctctcaatgtgatagattgtaatgttactaaggaagccttgtgttctgttttgaaacagaatggtaatcttaaaactttggcgtggtctattaattccagtcatctgtatttacctcctcgccgggtatcaagagaaactttcagggagttattggaaactttctgtaatgggcttccaactgctttcactggtttggatcaactgacgattcggtttccagtcctttttcgtaagtttaagatttatttgaactttggaatgccagtcatttgtagtaaactgtgcttgaaaaagtttgtgctccaatggtttgacatagctgacaaggccatacaatgtgttgaaattgttattgaaggaagtggcttacaatttccaccaacagagctaacaacatttttttcaaattctacaccttttaaccaccacttaaccagtttacaagcaatgtccttgaagacagctggttctgaaactcttcgcacatttgttttgcccaattttatttctaaactgtctgacaattgtgacaagcacatcagaaagttggcgacaaaatcggcaatagttaacatggacctaggagtattgggtttgcaggaaccagattgtctgatgtcaattcttagcgcacaacagtccttgagatatttgaaccttactggaatggacattactggccacatgttgcaagtgattgctacttcctcaccaaagcttgagtttcttaatttacgagattgcagagaatgcctcacaccaattcaagggttggagacactggcactttgttgcacaaacttggcccacttgaatctcaagggagttcactatggtcaagattctggggaaagactaaacaacgtcatggagatcatctcaaaattcactagtcttgtttctctgagcctttgcaattgtgtactaggctcaaacggtacaaataagacaagtgagcacagcttagatgaagacttgcacaaaagaaaaagaaagagtctgcgtggctgtcagtcaagtgagaaaatagcgacaagttcagctagcacttcagctgccgatgatttacaaacaccttgtgatgggttaagctgtgtgcgaacgtttgattacctgacacaagcctgcagtaaaataacagaatttgaactcatacggtctgcatcacaaggaattaactttgttaaaggttactatgagttacgtaataggcttcgagtaggcgtcaggtttcaagcagaagaatgcattggaatatgtcacacaattcgaaactcttatgacactttgctgtcaattgccaactggaaaagtttgcagagactaacacttgcagcaccgctcatgcaaggaagcttggaatgccttgttaccatagcaagaaactgtcccaacctgcagttcttatctcttgcaaccctgtctaatcttagtcattcaggaaatgtggctctacttcaagaagctctttcgtgttgccatcaactgaaagacttcagacttgaacagccatacttcaaaatcactgaatcatttgtaatgtcgcttggagaatcaaaacatcttgaacgtgtctgcatcattgccagggaaggtccaatgcagatagattctcgtgttgtgatctcattgtttgaaaagtgccaaaagctgttttattttcaagttctttgcgatattacaattaaggccagcaaaatgatggtggattctgtgaagaaaaggtttgtagaggcacgtcctggactgattgtgtctgtagttccatttcgccaggcctcaagtccaaacacttgtcaagtgcagattgtcaagactgttccagtcgtgcatctcaaagagttgtttctatttggaacttcagttgcaaccagtgttcctgcttga

Transcript

evm.model.Ap8.1250.1.5f15e76a

ATGGAGTCACTTCCAGAAGAAATGCTGTTTGCAATATTTCAAAATCTTGACCCGTTAGAACTTATATACTTATCAAGGGTCAACCGACGCTGGCACAACCTTGCCCTAAATCCTCGACTACACAGATTTGTGGACTTTCAGCAGAAGAAGCACCTTTCCTCCTCTTCAATTTGCTATTACATCAGCAAGTTCAAACACTCGCTGCAAGAGTTGAATCTGCAAGAATGTTACTGGCTGAAAGGCGGTGCTCTTTCTTGTGCACTACAAAAGTGCAGAAAATTGACATCTCTCAATGTGATAGATTGTAATGTTACTAAGGAAGCCTTGTGTTCTGTTTTGAAACAGAATGGTAATCTTAAAACTTTGGCGTGGTCTATTAATTCCAGTCATCTGTATTTACCTCCTCGCCGGGTATCAAGAGAAACTTTCAGGGAGTTATTGGAAACTTTCTGTAATGGGCTTCCAACTGCTTTCACTGGTTTGGATCAACTGACGATTCGGTTTCCAGTCCTTTTTCGTAAGTTTAAGATTTATTTGAACTTTGGAATGCCAGTCATTTGTAGTAAACTGTGCTTGAAAAAGTTTGTGCTCCAATGGTTTGACATAGCTGACAAGGCCATACAATGTGTTGAAATTGTTATTGAAGGAAGTGGCTTACAATTTCCACCAACAGAGCTAACAACATTTTTTTCAAATTCTACACCTTTTAACCACCACTTAACCAGTTTACAAGCAATGTCCTTGAAGACAGCTGGTTCTGAAACTCTTCGCACATTTGTTTTGCCCAATTTTATTTCTAAACTGTCTGACAATTGTGACAAGCACATCAGAAAGTTGGCGACAAAATCGGCAATAGTTAACATGGACCTAGGAGTATTGGGTTTGCAGGAACCAGATTGTCTGATGTCAATTCTTAGCGCACAACAGTCCTTGAGATATTTGAACCTTACTGGAATGGACATTACTGGCCACATGTTGCAAGTGATTGCTACTTCCTCACCAAAGCTTGAGTTTCTTAATTTACGAGATTGCAGAGAATGCCTCACACCAATTCAAGGGTTGGAGACACTGGCACTTTGTTGCACAAACTTGGCCCACTTGAATCTCAAGGGAGTTCACTATGGTCAAGATTCTGGGGAAAGACTAAACAACGTCATGGAGATCATCTCAAAATTCACTAGTCTTGTTTCTCTGAGCCTTTGCAATTGTGTACTAGGCTCAAACGGTACAAATAAGACAAGTGAGCACAGCTTAGATGAAGACTTGCACAAAAGAAAAAGAAAGAGTCTGCGTGGCTGTCAGTCAAGTGAGAAAATAGCGACAAGTTCAGCTAGCACTTCAGCTGCCGATGATTTACAAACACCTTGTGATGGGTTAAGCTGTGTGCGAACGTTTGATTACCTGACACAAGCCTGCAGTAAAATAACAGAATTTGAACTCATACGGTCTGCATCACAAGGAATTAACTTTGTTAAAGGTTACTATGAGTTACGTAATAGGCTTCGAGTAGGCGTCAGGTTTCAAGCAGAAGAATGCATTGGAATATGTCACACAATTCGAAACTCTTATGACACTTTGCTGTCAATTGCCAACTGGAAAAGTTTGCAGAGACTAACACTTGCAGCACCGCTCATGCAAGGAAGCTTGGAATGCCTTGTTACCATAGCAAGAAACTGTCCCAACCTGCAGTTCTTATCTCTTGCAACCCTGTCTAATCTTAGTCATTCAGGAAATGTGGCTCTACTTCAAGAAGCTCTTTCGTGTTGCCATCAACTGAAAGACTTCAGACTTGAACAGCCATACTTCAAAATCACTGAATCATTTGTAATGTCGCTTGGAGAATCAAAACATCTTGAACGTGTCTGCATCATTGCCAGGGAAGGTCCAATGCAGATAGATTCTCGTGTTGTGATCTCATTGTTTGAAAAGTGCCAAAAGCTGTTTTATTTTCAAGTTCTTTGCGATATTACAATTAAGGCCAGCAAAATGATGGTGGATTCTGTGAAGAAAAGGTTTGTAGAGGCACGTCCTGGACTGATTGTGTCTGTAGTTCCATTTCGCCAGGCCTCAAGTCCAAACACTTGTCAAGTGCAGATTGTCAAGACTGTTCCAGTCGTGCATCTCAAAGAGTTGTTTCTATTTGGAACTTCAGTTGCAACCAGTGTTCCTGCTTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003924 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19729 all species →	FBXL18_LRR	F-box/LRR-repeat protein 18, LRR	Repeat	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045627 all species →	Domain	F-box/LRR-repeat protein 18, LRR domain	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16134 all species →	F-BOX/TPR REPEAT PROTEIN POF3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031146 all species →	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0019005 all species →	Cellular Component	SCF ubiquitin ligase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap8.1250.1.5f15e76a.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.