Detailed information of evm.model.Ap8.1257 in Astrangia poculata

Genomic Location: Ap8:14010900...14032353
NR annotation: XP_020631391.1, probable ubiquitin carboxyl-terminal hydrolase FAM188B isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q0VA42Probable ubiquitin carboxyl-terminal hydrolase MINDY-4 OS=Xenopus tropicalis OX=8364 GN=mindy4 PE=2 SV=1
Q3UQI9Probable ubiquitin carboxyl-terminal hydrolase MINDY-4 OS=Mus musculus OX=10090 GN=Mindy4 PE=1 SV=1
A8MYZ0Inactive ubiquitin carboxyl-terminal hydrolase MINDY-4B OS=Homo sapiens OX=9606 GN=MINDY4B PE=3 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001667 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13898
all species →		MINDY-3_4_CDDeubiquitinating enzyme MINDY-3/4, conserved domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR039785
all species →		FamilyDeubiquitinating enzyme MINDY-3/4Interproscan
IPR025257
all species →		DomainDeubiquitinating enzyme MINDY-3/4, conserved domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12473
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004843
all species →		Molecular Functioncysteine-type deubiquitinase activityInterproscan
GO:0071108
all species →		Biological Processprotein K48-linked deubiquitinationInterproscan
GO:1990380
all species →		Molecular FunctionK48-linked deubiquitinase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K22647MINDY3_4; ubiquitin carboxyl-terminal hydrolase MINDY-3/4EC:3.4.19.12
Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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