Gene detail

Detailed information of evm.model.Ap8.129 in Astrangia poculata

Genomic Location: Ap8:1210074...1214824
NR annotation: XP_020603205.1, RANBP2-like and GRIP domain-containing protein 2 isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.129

atggatggagatcctcacgccttggagcagtccctttctgcaagagaacgggcgcttcagcaaaagatcgtcagactggagaagaaattggaaggctgccagtctcagatagatattgttgataatcaaagagagcaactggaggaaagagtgattaacatggagtcgactttggcgaaaacagagaaagaacttttggaagccaaaaaagaggtgatggacaaagagatagccgagaaagatttggcagagaaactaaagtctatgactcggcaagcggaggaatacaagactctttttgccgcagagaaaaacaagaacaaacacagcctcgagacactggaaacaatgatgtccacagtgaaagctgagatgtctacgcgaaaagagtttgacggcttcctaaacgagatgctcagtgcggttaaagaaagcttccacactcaactaaagattgtctatgataaactaacaggagcacaaaatgaacttgccaggtcgccccgagaaacggaccagtccaagtctctggttaggccccaggctctaccagatagcacttctagtcatggaactaccactgaaaagagtatatccagcgagatcccagttattgaagccgttaaaacagagacggaaaattcggaattcacaacggcagctacaaaggattctattgttgagtcagtagaaccaggcacatttcaggacttaaagagagaaccctcttcagctgcttcaattttccaatcacccgaaataaaggggttgtcaagtacagaactttttactattggacgaggaaaatcaagtgaagataatgaagatgatgtaatcgaccgttctccacgcaagacctcgtctttaagcaggcaccagattacaccaccgaacaagcattccacgacattctctcaggacagtagtatcttgaatcttccatttggcacaaatactccagccaagtttacattcagtctgcaggtttcgccaaagtcgccacctcgcaaacctaaatcgtcgccaccacctacgtcactattgtctcctgagattcctagtcacgcacagccttattttgagccgatcattcctcttccagatgaaatccaagttgtcacaggtgaagaaggtctggaggtgctgttttctgagcgagccaagctgtaccgttttgatgcagactcgggtcagtggaaggaaagaggtgttggaaatgtaaagcttttgcgtcatccaaagtcaggccaagggagagttctcatgagaagagagcacatcaaaaagttgtgtgccaatcacaacattaatgctggaatggagctaaaacccaatgttggatcagacagatcatgggtgtggtacactccagctgactatgctgagggtgaggcaagaccagagaagctcgccatcaagttaaagtcggcagaaattgctgggaagttcaaggaagtatttgaggaccttcaggagaccttgtcttcagaaattcgtcctgaaaccgaaccaactgtgtgtacacttgggtggacatgtgaagtgtgttatgttgaaaacaacgcaggagactcgaaatgcattgcatgtagctccagtaagtctgctgttggatctgttgaacctttgttgaaaacagccgaggttaaacctacaactacaaatagttctgtctttgagtcagtagaaccaaacgcttttcaggatttcaacaaggacttgactccacccactagtatagaagccaacgctgacacagttggtcggggtcagagtgttaggggcgcggatgctcccactaaagaagtacaggctgatggtagcagcaatgaggaaacgacctttcctaaagagagtgtcaaggtcttccaacctggcaagctgaacacggaagaaaagttcgtttttggctcttccagcatctcctcattgtccttccattcagtagctgaaacgtctttgaccagcagtccatttggacacaaaacatccaagacatctccttgttttgtaggtgctggctccccactgattgtgtcctcggtagaagcagaacataatgagtcagcaacagaagatgatcataacggtcctcactttgagccaatcattccactttctgacaagattgatgtgaaaactggggaatacgaagaagacgaagaagtcatgttttcccacagagccaaattataccgatttgtagcagaggacaagcagtggaaagaacgaggagtcggggatataaatttgttgagaaatagacaatcaggaaagatacgagttctgatgcgtcgggatcaggtgttgaaaatttgtgcaaatcatcagataacaactgacatgaaactacagcccaatgcagggtcagagaaatcctgggtttggagcactctggcagatttttctgagcaagaatgcaaagcagaacaacttgcggtcaggtttaaatcagaatacatcgctaagcaattcaaagaaaagtttgaggaatgccaagaaatgttgaagaaccagacagcagtaaaacgaattgcagaaggcaaatggcagaaagaaaatcttctcactaagtttaaagctgctgaggggtcgtgggagtgtgacatctgcatggtgagaaacgacagtgatagaattgagtgtgttgcttgtggaactcttaaaccaggagcagaaccacgtcaagaccaaaagaaagatcaaggaaaagccaaggtgatacaaagccagatttcatctttagttcattga

Transcript

evm.model.Ap8.129

ATGGATGGAGATCCTCACGCCTTGGAGCAGTCCCTTTCTGCAAGAGAACGGGCGCTTCAGCAAAAGATCGTCAGACTGGAGAAGAAATTGGAAGGCTGCCAGTCTCAGATAGATATTGTTGATAATCAAAGAGAGCAACTGGAGGAAAGAGTGATTAACATGGAGTCGACTTTGGCGAAAACAGAGAAAGAACTTTTGGAAGCCAAAAAAGAGGTGATGGACAAAGAGATAGCCGAGAAAGATTTGGCAGAGAAACTAAAGTCTATGACTCGGCAAGCGGAGGAATACAAGACTCTTTTTGCCGCAGAGAAAAACAAGAACAAACACAGCCTCGAGACACTGGAAACAATGATGTCCACAGTGAAAGCTGAGATGTCTACGCGAAAAGAGTTTGACGGCTTCCTAAACGAGATGCTCAGTGCGGTTAAAGAAAGCTTCCACACTCAACTAAAGATTGTCTATGATAAACTAACAGGAGCACAAAATGAACTTGCCAGGTCGCCCCGAGAAACGGACCAGTCCAAGTCTCTGGTTAGGCCCCAGGCTCTACCAGATAGCACTTCTAGTCATGGAACTACCACTGAAAAGAGTATATCCAGCGAGATCCCAGTTATTGAAGCCGTTAAAACAGAGACGGAAAATTCGGAATTCACAACGGCAGCTACAAAGGATTCTATTGTTGAGTCAGTAGAACCAGGCACATTTCAGGACTTAAAGAGAGAACCCTCTTCAGCTGCTTCAATTTTCCAATCACCCGAAATAAAGGGGTTGTCAAGTACAGAACTTTTTACTATTGGACGAGGAAAATCAAGTGAAGATAATGAAGATGATGTAATCGACCGTTCTCCACGCAAGACCTCGTCTTTAAGCAGGCACCAGATTACACCACCGAACAAGCATTCCACGACATTCTCTCAGGACAGTAGTATCTTGAATCTTCCATTTGGCACAAATACTCCAGCCAAGTTTACATTCAGTCTGCAGGTTTCGCCAAAGTCGCCACCTCGCAAACCTAAATCGTCGCCACCACCTACGTCACTATTGTCTCCTGAGATTCCTAGTCACGCACAGCCTTATTTTGAGCCGATCATTCCTCTTCCAGATGAAATCCAAGTTGTCACAGGTGAAGAAGGTCTGGAGGTGCTGTTTTCTGAGCGAGCCAAGCTGTACCGTTTTGATGCAGACTCGGGTCAGTGGAAGGAAAGAGGTGTTGGAAATGTAAAGCTTTTGCGTCATCCAAAGTCAGGCCAAGGGAGAGTTCTCATGAGAAGAGAGCACATCAAAAAGTTGTGTGCCAATCACAACATTAATGCTGGAATGGAGCTAAAACCCAATGTTGGATCAGACAGATCATGGGTGTGGTACACTCCAGCTGACTATGCTGAGGGTGAGGCAAGACCAGAGAAGCTCGCCATCAAGTTAAAGTCGGCAGAAATTGCTGGGAAGTTCAAGGAAGTATTTGAGGACCTTCAGGAGACCTTGTCTTCAGAAATTCGTCCTGAAACCGAACCAACTGTGTGTACACTTGGGTGGACATGTGAAGTGTGTTATGTTGAAAACAACGCAGGAGACTCGAAATGCATTGCATGTAGCTCCAGTAAGTCTGCTGTTGGATCTGTTGAACCTTTGTTGAAAACAGCCGAGGTTAAACCTACAACTACAAATAGTTCTGTCTTTGAGTCAGTAGAACCAAACGCTTTTCAGGATTTCAACAAGGACTTGACTCCACCCACTAGTATAGAAGCCAACGCTGACACAGTTGGTCGGGGTCAGAGTGTTAGGGGCGCGGATGCTCCCACTAAAGAAGTACAGGCTGATGGTAGCAGCAATGAGGAAACGACCTTTCCTAAAGAGAGTGTCAAGGTCTTCCAACCTGGCAAGCTGAACACGGAAGAAAAGTTCGTTTTTGGCTCTTCCAGCATCTCCTCATTGTCCTTCCATTCAGTAGCTGAAACGTCTTTGACCAGCAGTCCATTTGGACACAAAACATCCAAGACATCTCCTTGTTTTGTAGGTGCTGGCTCCCCACTGATTGTGTCCTCGGTAGAAGCAGAACATAATGAGTCAGCAACAGAAGATGATCATAACGGTCCTCACTTTGAGCCAATCATTCCACTTTCTGACAAGATTGATGTGAAAACTGGGGAATACGAAGAAGACGAAGAAGTCATGTTTTCCCACAGAGCCAAATTATACCGATTTGTAGCAGAGGACAAGCAGTGGAAAGAACGAGGAGTCGGGGATATAAATTTGTTGAGAAATAGACAATCAGGAAAGATACGAGTTCTGATGCGTCGGGATCAGGTGTTGAAAATTTGTGCAAATCATCAGATAACAACTGACATGAAACTACAGCCCAATGCAGGGTCAGAGAAATCCTGGGTTTGGAGCACTCTGGCAGATTTTTCTGAGCAAGAATGCAAAGCAGAACAACTTGCGGTCAGGTTTAAATCAGAATACATCGCTAAGCAATTCAAAGAAAAGTTTGAGGAATGCCAAGAAATGTTGAAGAACCAGACAGCAGTAAAACGAATTGCAGAAGGCAAATGGCAGAAAGAAAATCTTCTCACTAAGTTTAAAGCTGCTGAGGGGTCGTGGGAGTGTGACATCTGCATGGTGAGAAACGACAGTGATAGAATTGAGTGTGTTGCTTGTGGAACTCTTAAACCAGGAGCAGAACCACGTCAAGACCAAAAGAAAGATCAAGGAAAAGCCAAGGTGATACAAAGCCAGATTTCATCTTTAGTTCATTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9ERU9	E3 SUMO-protein ligase RanBP2 OS=Mus musculus OX=10090 GN=Ranbp2 PE=1 SV=2
O14715	RANBP2-like and GRIP domain-containing protein 8 OS=Homo sapiens OX=9606 GN=RGPD8 PE=1 SV=2
A6NKT7	RanBP2-like and GRIP domain-containing protein 3 OS=Homo sapiens OX=9606 GN=RGPD3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003339 (this species only)
Ubiquitin family	UBD\|ZnF\|NZF · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00641 all species →	zf-RanBP	Zn-finger in Ran binding protein and others	Domain	Interproscan
PF00638 all species →	Ran_BP1	RanBP1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001876 all species →	Domain	Zinc finger, RanBP2-type	Interproscan
IPR000156 all species →	Domain	Ran binding domain	Interproscan
IPR036443 all species →	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR045255 all species →	Family	Ran binding protein RanBP1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23138 all species →	RAN BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046907 all species →	Biological Process	intracellular transport	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap8.129.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.