Genomic Location: Ap8:14690564...14729254
NR annotation: KAJ7384256.1, Sortilin- receptor [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap8.1315 |
| Transcript |
| evm.model.Ap8.1315 |
| Protein |
| evm.model.Ap8.1315 |
| UniProt accession | Description |
|---|---|
| Q98930 | Sortilin-related receptor (Fragment) OS=Gallus gallus OX=9031 GN=SORL1 PE=2 SV=1 |
| Q95209 | Sortilin-related receptor OS=Oryctolagus cuniculus OX=9986 GN=SORL1 PE=1 SV=1 |
| O88307 | Sortilin-related receptor OS=Mus musculus OX=10090 GN=Sorl1 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000636 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF15901 all species → | Sortilin_C | Sortilin, neurotensin receptor 3, C-terminal | Domain | Interproscan |
| PF00058 all species → | Ldl_recept_b | Low-density lipoprotein receptor repeat class B | Repeat | Interproscan |
| PF00057 all species → | Ldl_recept_a | Low-density lipoprotein receptor domain class A | Repeat | Interproscan |
| PF15902 all species → | Sortilin-Vps10 | Sortilin, neurotensin receptor 3, | Repeat | Interproscan |
| PF00041 all species → | fn3 | Fibronectin type III domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003961 all species → | Domain | Fibronectin type III | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR002172 all species → | Repeat | Low-density lipoprotein (LDL) receptor class A repeat | Interproscan |
| IPR023415 all species → | Conserved_site | Low-density lipoprotein (LDL) receptor class A, conserved site | Interproscan |
| IPR000033 all species → | Repeat | LDLR class B repeat | Interproscan |
| IPR006581 all species → | Domain | VPS10 | Interproscan |
| IPR036055 all species → | Homologous_superfamily | LDL receptor-like superfamily | Interproscan |
| IPR036116 all species → | Homologous_superfamily | Fibronectin type III superfamily | Interproscan |
| IPR031777 all species → | Domain | Sortilin, C-terminal | Interproscan |
| IPR000742 all species → | Domain | EGF-like domain | Interproscan |
| IPR051221 all species → | Family | Low-density lipoprotein receptor-related | Interproscan |
| IPR031778 all species → | Domain | Sortilin, N-terminal | Interproscan |
| IPR011042 all species → | Homologous_superfamily | Six-bladed beta-propeller, TolB-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22722 all species → | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0006898 all species → | Biological Process | receptor-mediated endocytosis | Interproscan |
| GO:0016324 all species → | Cellular Component | apical plasma membrane | Interproscan |
| GO:0042562 all species → | Molecular Function | hormone binding | Interproscan |
| GO:0043235 all species → | Cellular Component | receptor complex | Interproscan |
evm.model.Ap8.1315.Transcript abundance of evm.model.Ap8.1315 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
