Gene detail

Detailed information of evm.model.Ap8.1353 in Astrangia poculata

Genomic Location: Ap8:15121494...15152606
NR annotation: XP_027047899.1, histone demethylase UTY-like [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.1353

gatgctgcatttctttatggcttagggattgtgtattttaatttttctgcatatccctgggcaataaagatattccagcaagtgctttatattgatcccagctttaattgttccaatgaagttcacctcaggctgggaatcatattcaaagcacaaggcagctgtgaagcaagtatcaaacactttcagatggcactaatggattccagtccttgctcactgtctaaagttgaaattcgctttcatctgggtcacctttttgaaatgcagaacaagtgtgatttagctcaagaaatgtatgaaaccatcatagagactcctaatgcacccaacactgtcagggctaatgcatataaacaactgggttggatgtattataacaaggaacaccttggagatagaacatccagaatggagaaagctgtccagttgttactgaaggctatcgagacagatccaaatagtggtgctgcatggtatcttataggcaggtgttatgccatgcaaggaaaagtgcatgatgcttttacatcttatcgtcatgccattgacaaatcagaggccaatgccgacacctggtgttctataggagttttgtatcaacaacaaaatcagcctatggatgcattgcaggcctatgtgtgtgccatccagttggaccctacacatgtcgcagcatggacagacctgggtattctttatgaagcctgtgaacagctgaggcaaaaggattcgtgtagactccgtggccccaacgatgctattgcttgttacagtgcggccaggagatatggtgcgacagacagcacaattgaggctcgtgtaaaagcactacaggctcagctggccatgatgccacagcaagaagaagcccagaaaaagaatattccatctgtggatgaagcttggaagttacctattcctgctgaacttacaacaagaacaataaggaatgcacaggtgaaattgttgacaagtggtcagttacaaggtctgcaacaacagcagctgcaacaaatttatctacaacaacagcagcaagcacaacagcagcaacaaggcacagaactaagtagtactcaagctaacgctacagtgtccttggaaaatacagcagccattcctaccatgaccaaccatgtttcttttcagagtacaaaaggagaaaatcatgaacatcttaatgcaagtcaggttaatcaaccttcttttcctggtttaagttcacaaaataactggtctgatacagttcaaccacacaatggtcaaaattcggcatccacaggcttggacaatcagcttgctaagccaccaagtagtgaggtgcaaactagtacttgtgttgcaacacaaggaatctccaattcagtcactcctgcattgctcacacaatcattgcctggcccttttatgcagtcagagtcactcctaacaggttctcgtagtaactcatcggtgtctgccatggaaacatctgttgcgccaggagatcacatgatgcaagtggcaggacatcagaactctatagcagggcctgatactgcagtgctttcatcgctttcgtcaaactttgtttcaacgtcttctaatgtacttgttagtcagagtgttgttagtagtcaaggaacagcttttctttccagtgaatcactgacaacagggtcgtcaaccacaactgaggcatcattaactagcggaatggatacaacacttttgactgaaataaactgctctgctgacattaaacccagtccgttaacaggaaatagtgatccaacattgagtaatgggccaatctcaacctattcaggattttcaagtgctactggttgtgtgagtggactgaccatttctccattctcctctccaagttacgtcatgtcgcccacgcagaaatcaccttttcacacaacttcaactctgtccccaagtttaactcaacctctctctatcatcaacccaagctgtttatctccaagttcaggtctacagggaggacaatcgacgttctctccgtctctgattccgtctgaccttttgtctccatcaaaacagcttgcagttatttcgcctggttcatccaagtcaccattcaatcttacttcagggggtggtgattcggtggtcccaaagttgaatttattatttgatgccaatgaaatgcctcacgcacctcctactccagcacctcctcttccaacagacaagctatcaccacagaccccaattatttatgttgagaacaagaaggatgcattttcaccagtgctccaaaacctggtgctgaataatacacaccctgttctagtaatcagaggattggcagctgcacttagattagatttgagtttgttttcaaccaagactcttgttgaaacaaatggcgatcaccaagtagaagtgagaacacagagacttcaagcctcagatgaaaactgggatactaatggtgaaaacaaagtttggctttgcgagagtagcagatcattcacaacaattgcaaagtatgctcaataccaggccaattcattccaggagtccttgaaggaagagcacgagagactggcaggcataaaagaaccatcactttcagacagtgattcttcatcaagctcaaagaatggtagaaaaggcaaaggaaagaaatttaaatggatcaagtttggtactaatgttgacctttctgatgaaagaaaatggaaaacacagcttcaagagctaactaaacttccaccatttgcaaaggttgtaactccagggaacatgttgagccatattggtcacacaattcttggaatgaattcagtgcagttgtacatgaagataccagggtgccggacaccaggtcatcaagaaaacaataatttctacgccataaatatcaacattggtcctggagactcagagtggtttgcaactcctacagagtattggggagtcctacacaacctttgtgaaaagaataatgttaattttctaacaggctcttggtggcccattctagaggagctttatgaggaacgtattccagtgtacagattcattcagaggcctggtgacctggtctggctcagcccaggggtcgttcactgggtacagtcatcgggctggtgtaacaacattgcatggaatgtaggacctcttatggagactatgtacaatgctgccattgacagatatgaatggaacaaactacaaggtgagaagtccattgttgcaatgctgcatctatcatggaacctagcaagaaatgtcaaaatcactgagagaaaacttttcgaacacatcagagtggtactggccaggtcgctcaagtattgccaggttaccgtggagaaactaaagcgtgctgggattgaggtgatgtggcatggaaagaaacacaatgaaggatcccattactgtgctcagtgcgatgtggaagtgtttaacattctgtttgtgactgacaacaagaagcacttagtttattgccaagattgcgcgagaaagaccagcatcaatcttgatgggtttattgtcctcaatcagtacacacttgaagagctgactgaagtatataataattttaaattacacacggtgaccccacgggttgtggattccgtgatgtcccagaattcatctcaacctgttggcgtggtcgctcagggtgttagtaatttggcttag

Transcript

evm.model.Ap8.1353

GATGCTGCATTTCTTTATGGCTTAGGGATTGTGTATTTTAATTTTTCTGCATATCCCTGGGCAATAAAGATATTCCAGCAAGTGCTTTATATTGATCCCAGCTTTAATTGTTCCAATGAAGTTCACCTCAGGCTGGGAATCATATTCAAAGCACAAGGCAGCTGTGAAGCAAGTATCAAACACTTTCAGATGGCACTAATGGATTCCAGTCCTTGCTCACTGTCTAAAGTTGAAATTCGCTTTCATCTGGGTCACCTTTTTGAAATGCAGAACAAGTGTGATTTAGCTCAAGAAATGTATGAAACCATCATAGAGACTCCTAATGCACCCAACACTGTCAGGGCTAATGCATATAAACAACTGGGTTGGATGTATTATAACAAGGAACACCTTGGAGATAGAACATCCAGAATGGAGAAAGCTGTCCAGTTGTTACTGAAGGCTATCGAGACAGATCCAAATAGTGGTGCTGCATGGTATCTTATAGGCAGGTGTTATGCCATGCAAGGAAAAGTGCATGATGCTTTTACATCTTATCGTCATGCCATTGACAAATCAGAGGCCAATGCCGACACCTGGTGTTCTATAGGAGTTTTGTATCAACAACAAAATCAGCCTATGGATGCATTGCAGGCCTATGTGTGTGCCATCCAGTTGGACCCTACACATGTCGCAGCATGGACAGACCTGGGTATTCTTTATGAAGCCTGTGAACAGCTGAGGCAAAAGGATTCGTGTAGACTCCGTGGCCCCAACGATGCTATTGCTTGTTACAGTGCGGCCAGGAGATATGGTGCGACAGACAGCACAATTGAGGCTCGTGTAAAAGCACTACAGGCTCAGCTGGCCATGATGCCACAGCAAGAAGAAGCCCAGAAAAAGAATATTCCATCTGTGGATGAAGCTTGGAAGTTACCTATTCCTGCTGAACTTACAACAAGAACAATAAGGAATGCACAGGTGAAATTGTTGACAAGTGGTCAGTTACAAGGTCTGCAACAACAGCAGCTGCAACAAATTTATCTACAACAACAGCAGCAAGCACAACAGCAGCAACAAGGCACAGAACTAAGTAGTACTCAAGCTAACGCTACAGTGTCCTTGGAAAATACAGCAGCCATTCCTACCATGACCAACCATGTTTCTTTTCAGAGTACAAAAGGAGAAAATCATGAACATCTTAATGCAAGTCAGGTTAATCAACCTTCTTTTCCTGGTTTAAGTTCACAAAATAACTGGTCTGATACAGTTCAACCACACAATGGTCAAAATTCGGCATCCACAGGCTTGGACAATCAGCTTGCTAAGCCACCAAGTAGTGAGGTGCAAACTAGTACTTGTGTTGCAACACAAGGAATCTCCAATTCAGTCACTCCTGCATTGCTCACACAATCATTGCCTGGCCCTTTTATGCAGTCAGAGTCACTCCTAACAGGTTCTCGTAGTAACTCATCGGTGTCTGCCATGGAAACATCTGTTGCGCCAGGAGATCACATGATGCAAGTGGCAGGACATCAGAACTCTATAGCAGGGCCTGATACTGCAGTGCTTTCATCGCTTTCGTCAAACTTTGTTTCAACGTCTTCTAATGTACTTGTTAGTCAGAGTGTTGTTAGTAGTCAAGGAACAGCTTTTCTTTCCAGTGAATCACTGACAACAGGGTCGTCAACCACAACTGAGGCATCATTAACTAGCGGAATGGATACAACACTTTTGACTGAAATAAACTGCTCTGCTGACATTAAACCCAGTCCGTTAACAGGAAATAGTGATCCAACATTGAGTAATGGGCCAATCTCAACCTATTCAGGATTTTCAAGTGCTACTGGTTGTGTGAGTGGACTGACCATTTCTCCATTCTCCTCTCCAAGTTACGTCATGTCGCCCACGCAGAAATCACCTTTTCACACAACTTCAACTCTGTCCCCAAGTTTAACTCAACCTCTCTCTATCATCAACCCAAGCTGTTTATCTCCAAGTTCAGGTCTACAGGGAGGACAATCGACGTTCTCTCCGTCTCTGATTCCGTCTGACCTTTTGTCTCCATCAAAACAGCTTGCAGTTATTTCGCCTGGTTCATCCAAGTCACCATTCAATCTTACTTCAGGGGGTGGTGATTCGGTGGTCCCAAAGTTGAATTTATTATTTGATGCCAATGAAATGCCTCACGCACCTCCTACTCCAGCACCTCCTCTTCCAACAGACAAGCTATCACCACAGACCCCAATTATTTATGTTGAGAACAAGAAGGATGCATTTTCACCAGTGCTCCAAAACCTGGTGCTGAATAATACACACCCTGTTCTAGTAATCAGAGGATTGGCAGCTGCACTTAGATTAGATTTGAGTTTGTTTTCAACCAAGACTCTTGTTGAAACAAATGGCGATCACCAAGTAGAAGTGAGAACACAGAGACTTCAAGCCTCAGATGAAAACTGGGATACTAATGGTGAAAACAAAGTTTGGCTTTGCGAGAGTAGCAGATCATTCACAACAATTGCAAAGTATGCTCAATACCAGGCCAATTCATTCCAGGAGTCCTTGAAGGAAGAGCACGAGAGACTGGCAGGCATAAAAGAACCATCACTTTCAGACAGTGATTCTTCATCAAGCTCAAAGAATGGTAGAAAAGGCAAAGGAAAGAAATTTAAATGGATCAAGTTTGGTACTAATGTTGACCTTTCTGATGAAAGAAAATGGAAAACACAGCTTCAAGAGCTAACTAAACTTCCACCATTTGCAAAGGTTGTAACTCCAGGGAACATGTTGAGCCATATTGGTCACACAATTCTTGGAATGAATTCAGTGCAGTTGTACATGAAGATACCAGGGTGCCGGACACCAGGTCATCAAGAAAACAATAATTTCTACGCCATAAATATCAACATTGGTCCTGGAGACTCAGAGTGGTTTGCAACTCCTACAGAGTATTGGGGAGTCCTACACAACCTTTGTGAAAAGAATAATGTTAATTTTCTAACAGGCTCTTGGTGGCCCATTCTAGAGGAGCTTTATGAGGAACGTATTCCAGTGTACAGATTCATTCAGAGGCCTGGTGACCTGGTCTGGCTCAGCCCAGGGGTCGTTCACTGGGTACAGTCATCGGGCTGGTGTAACAACATTGCATGGAATGTAGGACCTCTTATGGAGACTATGTACAATGCTGCCATTGACAGATATGAATGGAACAAACTACAAGGTGAGAAGTCCATTGTTGCAATGCTGCATCTATCATGGAACCTAGCAAGAAATGTCAAAATCACTGAGAGAAAACTTTTCGAACACATCAGAGTGGTACTGGCCAGGTCGCTCAAGTATTGCCAGGTTACCGTGGAGAAACTAAAGCGTGCTGGGATTGAGGTGATGTGGCATGGAAAGAAACACAATGAAGGATCCCATTACTGTGCTCAGTGCGATGTGGAAGTGTTTAACATTCTGTTTGTGACTGACAACAAGAAGCACTTAGTTTATTGCCAAGATTGCGCGAGAAAGACCAGCATCAATCTTGATGGGTTTATTGTCCTCAATCAGTACACACTTGAAGAGCTGACTGAAGTATATAATAATTTTAAATTACACACGGTGACCCCACGGGTTGTGGATTCCGTGATGTCCCAGAATTCATCTCAACCTGTTGGCGTGGTCGCTCAGGGTGTTAGTAATTTGGCTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O15550	Lysine-specific demethylase 6A OS=Homo sapiens OX=9606 GN=KDM6A PE=1 SV=2
O70546	Lysine-specific demethylase 6A OS=Mus musculus OX=10090 GN=Kdm6a PE=1 SV=2
P79457	Histone demethylase UTY OS=Mus musculus OX=10090 GN=Uty PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003601 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21322 all species →	KDM6_C-hel	Lysine-specific demethylase 6/UTY, C-terminal helical domain	Domain	Interproscan
PF21326 all species →	KDM6_GATAL	KDM6, GATA-like	Domain	Interproscan
PF02373 all species →	JmjC	JmjC domain, hydroxylase	Domain	Interproscan
PF13431 all species →	TPR_17	Tetratricopeptide repeat	Repeat	Interproscan
PF00515 all species →	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051630 all species →	Family	Transcriptional Corepressor and Histone Demethylase	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR048562 all species →	Domain	Lysine-specific demethylase 6A/B-like, C-terminal helical domain	Interproscan
IPR048560 all species →	Domain	Lysine-specific demethylase 6A/B-like, GATA-like	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR003347 all species →	Domain	JmjC domain	Interproscan
IPR046941 all species →	Homologous_superfamily	Lysine-specific demethylase 6, GATA-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14017 all species →	LYSINE-SPECIFIC DEMETHYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan
GO:0031490 all species →	Molecular Function	chromatin DNA binding	Interproscan
GO:0044666 all species →	Cellular Component	MLL3/4 complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11447	UTX, KDM6A; lysine-specific demethylase 6A	EC:1.14.11.68	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.