Detailed information of evm.model.Ap8.138 in Astrangia poculata

Genomic Location: Ap8:1287073...1293407
NR annotation: KAJ7392572.1, hypothetical protein OS493_010219 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000863 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01391
all species →		CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF00229
all species →		TNFTNF(Tumour Necrosis Factor) family DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008160
all species →		RepeatCollagen triple helix repeatInterproscan
IPR006052
all species →		DomainTumour necrosis factor domainInterproscan
IPR021184
all species →		Conserved_siteTumour necrosis factor, conserved siteInterproscan
IPR008983
all species →		Homologous_superfamilyTumour necrosis factor-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11471
all species →		TUMOR NECROSIS FACTOR FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005164
all species →		Molecular Functiontumor necrosis factor receptor bindingInterproscan
GO:0006955
all species →		Biological Processimmune responseInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K24211C1QTNF2; complement C1q and tumor necrosis factor-related protein 2-Domain-containing proteins not elsewhere classifiedko04990deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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