Gene detail

Detailed information of evm.model.Ap8.141 in Astrangia poculata

Genomic Location: Ap8:1317825...1341412
NR annotation: XP_020612818.1, collagen alpha-1(XII) chain-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.141

atggaaaagaaagaaaagcgaagtggagggcatcttctccctgttttagttgtttgtatgttgctagcttgcgcaggtcttgtgtttgctatttacactcacagagaactcagttggctcaaaacccaaatcagtgagcacgagaagctcatacagaccttacagctcggtgacaatgcccgagatatccaggggtcaaaggacgcagttcgtattcggagaagcactccggattcttgcacatgtgttggagccccagggaaacgtggtgaaacgggaaagcccggggagaacggcgccgaaggcccccgtggctctccaggttctcgtggacctgctgggccgcaaggcttcaagggagaccgcggtgacgcaggttttccaggaatgcctggctcccctggccttaaaggtgatctagggatcaagggagaacccggtgaagcaggcccagcaggcgagccaggaataaccggtgcacccggccctactggccctagaggagagccaggactacgaggggaacaaggcatgccgggaatgcctggggcaaccggccctgttggccccccaggttctcgaggacctcctgggacgcaaggcatcaagggagatcgcggtgtcgaaggtcgtataagacttgtaggcactccagggaaacagcaagtgatgggattgcccggaacccccggagaacccggggcacccggatctatgggcccacctggccctgcaggttctcgtggacctgctgggccggaaggcttcaagggagaccgcggtgaagcaggtttcccagggccaccaggtgcaacaggaatgcatggctcccctggccctaaaggaaatgaaggatctccaggcattattggcgaaaaaggacaaaaaggtgatccaggtgaacgtggatttgagggaggccccggtgaaaaaggaaataatggatctccaggaaataaaggtgatcctggatattctggcaacaagggagaacccggtgaaaaaggtgatccaggtgaacgtggatttgatggtttcaagggtgaaaaaggcgcagcaggaacaactggtgaacccggtcctgctggccctagaggattaccaggggtacaaggcgcgctgggaatgaccggggcacccggggaacccggccctgttggccccacaggagagccaggattaccaggggaacaaggcacgctgggaatgaccggggcacccggggaacccggccctgttggccccccaggatctgatggtcatccgggatctgtgatccatgaaagcatccacttggttggcaacggacaaaaaagtaacagtcaacgcgtaacaaactgggcactaaggcacagggaaggcagtatcctgtacaacccagtgaccggacacatagaggtgaagaaaccagggtattacttcatatacagccagatgtattactatgatggcagctcaacgtacatgggtcacgcaacgctcatcaatgacgagaaagtgttgggaagtattgggagcgtgattaattccaagaagtttccagacaccaagtaccatggcggagtgttcttacttcgggaaaacgatacaatttcagttcacatctcaaaaaggcgtaattactacatgacttctaaagagagcttttttggtgcgttttggcttggaaggggagcacaagtactttctcctcccacgacaccaccacctcctccctctcctattactactactactacttcatcaaatcttacgactccaacagaatttgtttgcctgagggaaactgtagcagacgtggccttcattgtcgattcgtcaggaagtattagtcggagaaactggctcaaaatgctgcacttcctgaaaaatatggtcaaagccttcaatgtcggcccggataaaacacacatcgccgtggtgacctacagcacagcagctaaggttgagtttaaatttgacacgcttactggatctcaagtgacagtactggaatactctcgacttatcgataaaatgcgattgcagaggggctttacttataccgacaaaggtttgacacttgccaaccgagaagtatttacaagagaagctggaatgagaccagagcttccacagattgcgattgttattactgacggcaggcaaacaaagtaccatccgtatacagagcttggtgtggcatccagtggacttaaattaaagaaagttcaggtgtattccattggcgttggggccaagaaacgtctcgacattcaagagttggaagacatagccagttcaaaagaacacgtgcttttcgccgatagttttgatgatcttacttccgtggctcagacgattatacaggattcgtgtccagataagaaagtgacaccacaagcatcggtgcagtctaagaactga

Transcript

evm.model.Ap8.141

ATGGAAAAGAAAGAAAAGCGAAGTGGAGGGCATCTTCTCCCTGTTTTAGTTGTTTGTATGTTGCTAGCTTGCGCAGGTCTTGTGTTTGCTATTTACACTCACAGAGAACTCAGTTGGCTCAAAACCCAAATCAGTGAGCACGAGAAGCTCATACAGACCTTACAGCTCGGTGACAATGCCCGAGATATCCAGGGGTCAAAGGACGCAGTTCGTATTCGGAGAAGCACTCCGGATTCTTGCACATGTGTTGGAGCCCCAGGGAAACGTGGTGAAACGGGAAAGCCCGGGGAGAACGGCGCCGAAGGCCCCCGTGGCTCTCCAGGTTCTCGTGGACCTGCTGGGCCGCAAGGCTTCAAGGGAGACCGCGGTGACGCAGGTTTTCCAGGAATGCCTGGCTCCCCTGGCCTTAAAGGTGATCTAGGGATCAAGGGAGAACCCGGTGAAGCAGGCCCAGCAGGCGAGCCAGGAATAACCGGTGCACCCGGCCCTACTGGCCCTAGAGGAGAGCCAGGACTACGAGGGGAACAAGGCATGCCGGGAATGCCTGGGGCAACCGGCCCTGTTGGCCCCCCAGGTTCTCGAGGACCTCCTGGGACGCAAGGCATCAAGGGAGATCGCGGTGTCGAAGGTCGTATAAGACTTGTAGGCACTCCAGGGAAACAGCAAGTGATGGGATTGCCCGGAACCCCCGGAGAACCCGGGGCACCCGGATCTATGGGCCCACCTGGCCCTGCAGGTTCTCGTGGACCTGCTGGGCCGGAAGGCTTCAAGGGAGACCGCGGTGAAGCAGGTTTCCCAGGGCCACCAGGTGCAACAGGAATGCATGGCTCCCCTGGCCCTAAAGGAAATGAAGGATCTCCAGGCATTATTGGCGAAAAAGGACAAAAAGGTGATCCAGGTGAACGTGGATTTGAGGGAGGCCCCGGTGAAAAAGGAAATAATGGATCTCCAGGAAATAAAGGTGATCCTGGATATTCTGGCAACAAGGGAGAACCCGGTGAAAAAGGTGATCCAGGTGAACGTGGATTTGATGGTTTCAAGGGTGAAAAAGGCGCAGCAGGAACAACTGGTGAACCCGGTCCTGCTGGCCCTAGAGGATTACCAGGGGTACAAGGCGCGCTGGGAATGACCGGGGCACCCGGGGAACCCGGCCCTGTTGGCCCCACAGGAGAGCCAGGATTACCAGGGGAACAAGGCACGCTGGGAATGACCGGGGCACCCGGGGAACCCGGCCCTGTTGGCCCCCCAGGATCTGATGGTCATCCGGGATCTGTGATCCATGAAAGCATCCACTTGGTTGGCAACGGACAAAAAAGTAACAGTCAACGCGTAACAAACTGGGCACTAAGGCACAGGGAAGGCAGTATCCTGTACAACCCAGTGACCGGACACATAGAGGTGAAGAAACCAGGGTATTACTTCATATACAGCCAGATGTATTACTATGATGGCAGCTCAACGTACATGGGTCACGCAACGCTCATCAATGACGAGAAAGTGTTGGGAAGTATTGGGAGCGTGATTAATTCCAAGAAGTTTCCAGACACCAAGTACCATGGCGGAGTGTTCTTACTTCGGGAAAACGATACAATTTCAGTTCACATCTCAAAAAGGCGTAATTACTACATGACTTCTAAAGAGAGCTTTTTTGGTGCGTTTTGGCTTGGAAGGGGAGCACAAGTACTTTCTCCTCCCACGACACCACCACCTCCTCCCTCTCCTATTACTACTACTACTACTTCATCAAATCTTACGACTCCAACAGAATTTGTTTGCCTGAGGGAAACTGTAGCAGACGTGGCCTTCATTGTCGATTCGTCAGGAAGTATTAGTCGGAGAAACTGGCTCAAAATGCTGCACTTCCTGAAAAATATGGTCAAAGCCTTCAATGTCGGCCCGGATAAAACACACATCGCCGTGGTGACCTACAGCACAGCAGCTAAGGTTGAGTTTAAATTTGACACGCTTACTGGATCTCAAGTGACAGTACTGGAATACTCTCGACTTATCGATAAAATGCGATTGCAGAGGGGCTTTACTTATACCGACAAAGGTTTGACACTTGCCAACCGAGAAGTATTTACAAGAGAAGCTGGAATGAGACCAGAGCTTCCACAGATTGCGATTGTTATTACTGACGGCAGGCAAACAAAGTACCATCCGTATACAGAGCTTGGTGTGGCATCCAGTGGACTTAAATTAAAGAAAGTTCAGGTGTATTCCATTGGCGTTGGGGCCAAGAAACGTCTCGACATTCAAGAGTTGGAAGACATAGCCAGTTCAAAAGAACACGTGCTTTTCGCCGATAGTTTTGATGATCTTACTTCCGTGGCTCAGACGATTATACAGGATTCGTGTCCAGATAAGAAAGTGACACCACAAGCATCGGTGCAGTCTAAGAACTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P32018	Collagen alpha-1(XIV) chain OS=Gallus gallus OX=9031 GN=COL14A1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000162 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00229 all species →	TNF	TNF(Tumour Necrosis Factor) family	Domain	Interproscan
PF01391 all species →	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF00092 all species →	VWA	von Willebrand factor type A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR006052 all species →	Domain	Tumour necrosis factor domain	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan
IPR008160 all species →	Repeat	Collagen triple helix repeat	Interproscan
IPR050149 all species →	Family	Collagen superfamily	Interproscan
IPR008983 all species →	Homologous_superfamily	Tumour necrosis factor-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24023 all species →	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005164 all species →	Molecular Function	tumor necrosis factor receptor binding	Interproscan
GO:0006955 all species →	Biological Process	immune response	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0030020 all species →	Molecular Function	extracellular matrix structural constituent conferring tensile strength	Interproscan
GO:0030198 all species →	Biological Process	extracellular matrix organization	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap8.141.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.