Gene detail

Detailed information of evm.model.Ap8.1412 in Astrangia poculata

Genomic Location: Ap8:15934961...15939430
NR annotation: XP_044174700.1, uncharacterized protein LOC114970341 [Acropora millepora]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.1412

tggttactctcaattcccccgctagtccctttacaagtggtggagaacccaaatttcgtcgaactcatcatgccagctacaattgaagaattgcaaggcatcgtggctggacttgtcagcgttgtgaaagacttaacaacaaacgtaactcaagtaacccaaacagtcggcaacatggccgaagccgttccagcaccagttcaacacgaacatacacaaggtcttcgtatgccttcgatgcagcttccttcgtttcgtcgagatagtgtggtacaagacgatatctcggaatttctggagcggttcaaccagcaaacctcacatcttcccgccggaacacgtttctcccttcttgaacaacagtgtgttggcgactggccgagatctgtgttgtcaatagcaaaaactacagagggctacgcagataaagcggtagaagaccaatttaacatttgcatcgaaagattacgtgcagaattcggcgaatcaaaagaagacaagtgccgccgattagcagccgagttgagcgccattcaacaagagcgtggcgagtcagtggaacagtttgcgttcaaatacaagaaactactgcatcaattggagaaacttggcgaaaagattgcgaaagattgtcctacctttgttatttcacagtttatttctaaagtcaagcccagtattgctcagcagctcgttgtgaaagcatcagaatttgaaaccctcgataaagcagtcgaagcggctcgtcgtgttgagttgtcatttcaaactccgcccgccgcctcgaaaccaaatcagtcgctcgatgaatggaaagttacaccaccgaatgcgtttgtttcctcaacctccatgaaatctcaagatcagcactcccaacgacagcagagggcttgttacacttgtggagaaacaaatcatctgtcgaggtactgtccaaaataccgcaaagacacgtcaaaacaaccggagatatgcagaaattacaatcgattttccaaatctaattgcgaggaagacggcaacaaatgctcatatggccgacaacacaagtgccaacgctgtaacaagtggggctgtaaagctatcaaacactcagaaaatcgcccatcaagcacatctcgcagcgctgttccatctgatgaggtaaattctcttaggcagcaactcgtagtcttgtctactcgtctggaaaaatatgaagctcagtgtacggagaaatcctcgacttctattcctgcaggatctgaaaaccaaacctcaacctcagcttcacgaccaccacctccagcttcatttgatcagccctcaacatctactccattatttggattacctgccgttaccatccctgcacattcagcaaagccagaaactcagttgtgtcagcgtaatattctgtggacctctgttacatctgcaggtgaaccactgcccttgccattggatagttgttgttctgtatctcttgtgagcaaagtacatgctgatcttgttgcatccaaacgacctgacctcaagtattgtgcccttgaagaacacatttctgttacctctgcggattcaaagtctgatcttaaagcagttgccactatgcaaatccccatcacatgggaaaatgaaacagaaactgtctttactatgctcgtagttccaggtctcgtctggccaatgctctttggagagaaccaccttcatgcgactcaggcattggttgatcattatgctccgtccatcacctttcgccatccaagtatgcagtttcgagtccagtgctcgcttgacaatccacttcaaggttttgcaaacatctctgtacccaatagttcctcatcgtgtgcaagtggatcaacatcgcagaagcctcatgtcagtattacatgccttcttaccggagcaccaccactgggtgttcacaagcattcacaatcccttcaccgtggtcttaattttgttacggtctgtgtcaccctttctgcagctttaatgggataccaagtaatgcgtcaaccgctttggattgagggtaaagacattcaaccaggtgtcaaggttctcagtggtccctttgatctcagccaaatctcaagtcatgtgaaacctgaaacagcacgccctagcagtgatccgtgctacaatgctcagctcatagaccttgctgaaacaccagattcagttctaacagaagaaactcctgacatgcacatcacatactgcacaacactggcagtggaatctaagttgaagaagacaagtatccctgagaatgtcattctaggagatgttagagacatgacaaaggatgatgatgctgttctcgaagaagcagccgacactactgcaaaacaacttgcagatggatggcttacttgggcaaatactcagcagccacctgcttcattgcaacctccaaaggaaactgaacataaacattgtgacttagacttttgtgctccaaagcaatggcaactttcagtccaagtgaaagaaatggaagattctggtctcaactcatccatattgtctcctttctgtgatgccctaccagaatttgattgtcaaggtcctgagtttcctccagcagaagagctgacctgtgacccttactcatctgcctacagtgatgctatatttcatgccttggatttagatggcccagagtattctaatgttgatgaagatatcatgaagagatttaaggaacttatcagtcagtattctactgcatttgccctccctggtagtccactcggagctgttaaggggtttgagcatagaattgacacagctgatgcccctcctatctatcgtcacccatacaagaaaagcccagaagaactcagagcgatcaaaacagaaatcgagcggatgcttaagctaaagataatacaaccaagtcattcagaatggggttccccatgcatcctggtccgcaaacctccagaaaagggtaaactgcaacctccaagatttgtggtggactatcgccgcctcaacagtgtgacacaaggagatggttaccctatcccctctatctctagcgttcttgatgctgtcagccaaggaaaagtatttgcgaaatgtgacttggtcagtggttactggcaaatttctatccggcaatcggatcaacacaaaactgcattttgtacacacctgggactgtacgagtttctcaggcttcccttcggattaaaaacagcaccaaacacatttcagcggattttaaacactgtatttgcagattacttgcacaagtggcttgttgtttacgtggatgacataattcagtgggcaatgacagacgaggaagcccttgaacattattcattgttgtttcagagactggttaaagttggtatgcaactgaaaccttccaagtgtacattcttcgcaagggaaatcgaaatactgggacatcggatcacccaagaaggtcgaacaccaataagcaaaggagtagaagcaatcttatctatgcccacaccaactaacacttctgcagtcaagcgttttcttggactttgtggatattttagagactttattccatgcatgtctacccgaacacaagccttgcgatctcttctcaagaagggtgtgtcatttcagtggaccgaagaaacagcaagagagtttaaagacttgaagcaagcaatcactggcccagatgttatgttgttccatcctgattggaatgctcagtttgaattacatgtggatgctagcaagctaggatgcggagcaatgttagctcaagagaagcatggcatacttcgccccgtgagatttgcatcccgagcatttacaccagctgaatcacgttggacaacgatgcaccaggaactctttgctgtgaaatggggacttgaacagtttcgctcttacatactaggccgaagagttaaagttgtaaccgatcatgcgaatcttaaatggttgactaccatggcaccacaacaggcaaaagttgcaagatggtgcatgagcatggctgagtttgactttttcatcgaacacagaaaaggggaaagaaatgttgttcctgatgttctcagccgtcaccctgtaaaagaaaacattcctgaagacaatgttgttatacctccagagaacagtgttatcgcatttatgattatcgcaacctcagttgatgttccacaccacacccctgaacttgttcatggaacatttaacaatactatggcttgtttacacaatgcatgtcttatacctcaagctgattgcctcgacccagtctgcctggctactgctccaaagagaaacaaatgtacaaaggaaactcaaagcaaaacttctgttacaaaccagaccaagactcctcaagttggtacatctcaacaaagtccatcttcagactgcgactttcaagactttgaaaatttggaatctttaaacggaatcggtcaaagtttgctaagaggacagctacaagacttactggattaa

Transcript

evm.model.Ap8.1412

TGGTTACTCTCAATTCCCCCGCTAGTCCCTTTACAAGTGGTGGAGAACCCAAATTTCGTCGAACTCATCATGCCAGCTACAATTGAAGAATTGCAAGGCATCGTGGCTGGACTTGTCAGCGTTGTGAAAGACTTAACAACAAACGTAACTCAAGTAACCCAAACAGTCGGCAACATGGCCGAAGCCGTTCCAGCACCAGTTCAACACGAACATACACAAGGTCTTCGTATGCCTTCGATGCAGCTTCCTTCGTTTCGTCGAGATAGTGTGGTACAAGACGATATCTCGGAATTTCTGGAGCGGTTCAACCAGCAAACCTCACATCTTCCCGCCGGAACACGTTTCTCCCTTCTTGAACAACAGTGTGTTGGCGACTGGCCGAGATCTGTGTTGTCAATAGCAAAAACTACAGAGGGCTACGCAGATAAAGCGGTAGAAGACCAATTTAACATTTGCATCGAAAGATTACGTGCAGAATTCGGCGAATCAAAAGAAGACAAGTGCCGCCGATTAGCAGCCGAGTTGAGCGCCATTCAACAAGAGCGTGGCGAGTCAGTGGAACAGTTTGCGTTCAAATACAAGAAACTACTGCATCAATTGGAGAAACTTGGCGAAAAGATTGCGAAAGATTGTCCTACCTTTGTTATTTCACAGTTTATTTCTAAAGTCAAGCCCAGTATTGCTCAGCAGCTCGTTGTGAAAGCATCAGAATTTGAAACCCTCGATAAAGCAGTCGAAGCGGCTCGTCGTGTTGAGTTGTCATTTCAAACTCCGCCCGCCGCCTCGAAACCAAATCAGTCGCTCGATGAATGGAAAGTTACACCACCGAATGCGTTTGTTTCCTCAACCTCCATGAAATCTCAAGATCAGCACTCCCAACGACAGCAGAGGGCTTGTTACACTTGTGGAGAAACAAATCATCTGTCGAGGTACTGTCCAAAATACCGCAAAGACACGTCAAAACAACCGGAGATATGCAGAAATTACAATCGATTTTCCAAATCTAATTGCGAGGAAGACGGCAACAAATGCTCATATGGCCGACAACACAAGTGCCAACGCTGTAACAAGTGGGGCTGTAAAGCTATCAAACACTCAGAAAATCGCCCATCAAGCACATCTCGCAGCGCTGTTCCATCTGATGAGGTAAATTCTCTTAGGCAGCAACTCGTAGTCTTGTCTACTCGTCTGGAAAAATATGAAGCTCAGTGTACGGAGAAATCCTCGACTTCTATTCCTGCAGGATCTGAAAACCAAACCTCAACCTCAGCTTCACGACCACCACCTCCAGCTTCATTTGATCAGCCCTCAACATCTACTCCATTATTTGGATTACCTGCCGTTACCATCCCTGCACATTCAGCAAAGCCAGAAACTCAGTTGTGTCAGCGTAATATTCTGTGGACCTCTGTTACATCTGCAGGTGAACCACTGCCCTTGCCATTGGATAGTTGTTGTTCTGTATCTCTTGTGAGCAAAGTACATGCTGATCTTGTTGCATCCAAACGACCTGACCTCAAGTATTGTGCCCTTGAAGAACACATTTCTGTTACCTCTGCGGATTCAAAGTCTGATCTTAAAGCAGTTGCCACTATGCAAATCCCCATCACATGGGAAAATGAAACAGAAACTGTCTTTACTATGCTCGTAGTTCCAGGTCTCGTCTGGCCAATGCTCTTTGGAGAGAACCACCTTCATGCGACTCAGGCATTGGTTGATCATTATGCTCCGTCCATCACCTTTCGCCATCCAAGTATGCAGTTTCGAGTCCAGTGCTCGCTTGACAATCCACTTCAAGGTTTTGCAAACATCTCTGTACCCAATAGTTCCTCATCGTGTGCAAGTGGATCAACATCGCAGAAGCCTCATGTCAGTATTACATGCCTTCTTACCGGAGCACCACCACTGGGTGTTCACAAGCATTCACAATCCCTTCACCGTGGTCTTAATTTTGTTACGGTCTGTGTCACCCTTTCTGCAGCTTTAATGGGATACCAAGTAATGCGTCAACCGCTTTGGATTGAGGGTAAAGACATTCAACCAGGTGTCAAGGTTCTCAGTGGTCCCTTTGATCTCAGCCAAATCTCAAGTCATGTGAAACCTGAAACAGCACGCCCTAGCAGTGATCCGTGCTACAATGCTCAGCTCATAGACCTTGCTGAAACACCAGATTCAGTTCTAACAGAAGAAACTCCTGACATGCACATCACATACTGCACAACACTGGCAGTGGAATCTAAGTTGAAGAAGACAAGTATCCCTGAGAATGTCATTCTAGGAGATGTTAGAGACATGACAAAGGATGATGATGCTGTTCTCGAAGAAGCAGCCGACACTACTGCAAAACAACTTGCAGATGGATGGCTTACTTGGGCAAATACTCAGCAGCCACCTGCTTCATTGCAACCTCCAAAGGAAACTGAACATAAACATTGTGACTTAGACTTTTGTGCTCCAAAGCAATGGCAACTTTCAGTCCAAGTGAAAGAAATGGAAGATTCTGGTCTCAACTCATCCATATTGTCTCCTTTCTGTGATGCCCTACCAGAATTTGATTGTCAAGGTCCTGAGTTTCCTCCAGCAGAAGAGCTGACCTGTGACCCTTACTCATCTGCCTACAGTGATGCTATATTTCATGCCTTGGATTTAGATGGCCCAGAGTATTCTAATGTTGATGAAGATATCATGAAGAGATTTAAGGAACTTATCAGTCAGTATTCTACTGCATTTGCCCTCCCTGGTAGTCCACTCGGAGCTGTTAAGGGGTTTGAGCATAGAATTGACACAGCTGATGCCCCTCCTATCTATCGTCACCCATACAAGAAAAGCCCAGAAGAACTCAGAGCGATCAAAACAGAAATCGAGCGGATGCTTAAGCTAAAGATAATACAACCAAGTCATTCAGAATGGGGTTCCCCATGCATCCTGGTCCGCAAACCTCCAGAAAAGGGTAAACTGCAACCTCCAAGATTTGTGGTGGACTATCGCCGCCTCAACAGTGTGACACAAGGAGATGGTTACCCTATCCCCTCTATCTCTAGCGTTCTTGATGCTGTCAGCCAAGGAAAAGTATTTGCGAAATGTGACTTGGTCAGTGGTTACTGGCAAATTTCTATCCGGCAATCGGATCAACACAAAACTGCATTTTGTACACACCTGGGACTGTACGAGTTTCTCAGGCTTCCCTTCGGATTAAAAACAGCACCAAACACATTTCAGCGGATTTTAAACACTGTATTTGCAGATTACTTGCACAAGTGGCTTGTTGTTTACGTGGATGACATAATTCAGTGGGCAATGACAGACGAGGAAGCCCTTGAACATTATTCATTGTTGTTTCAGAGACTGGTTAAAGTTGGTATGCAACTGAAACCTTCCAAGTGTACATTCTTCGCAAGGGAAATCGAAATACTGGGACATCGGATCACCCAAGAAGGTCGAACACCAATAAGCAAAGGAGTAGAAGCAATCTTATCTATGCCCACACCAACTAACACTTCTGCAGTCAAGCGTTTTCTTGGACTTTGTGGATATTTTAGAGACTTTATTCCATGCATGTCTACCCGAACACAAGCCTTGCGATCTCTTCTCAAGAAGGGTGTGTCATTTCAGTGGACCGAAGAAACAGCAAGAGAGTTTAAAGACTTGAAGCAAGCAATCACTGGCCCAGATGTTATGTTGTTCCATCCTGATTGGAATGCTCAGTTTGAATTACATGTGGATGCTAGCAAGCTAGGATGCGGAGCAATGTTAGCTCAAGAGAAGCATGGCATACTTCGCCCCGTGAGATTTGCATCCCGAGCATTTACACCAGCTGAATCACGTTGGACAACGATGCACCAGGAACTCTTTGCTGTGAAATGGGGACTTGAACAGTTTCGCTCTTACATACTAGGCCGAAGAGTTAAAGTTGTAACCGATCATGCGAATCTTAAATGGTTGACTACCATGGCACCACAACAGGCAAAAGTTGCAAGATGGTGCATGAGCATGGCTGAGTTTGACTTTTTCATCGAACACAGAAAAGGGGAAAGAAATGTTGTTCCTGATGTTCTCAGCCGTCACCCTGTAAAAGAAAACATTCCTGAAGACAATGTTGTTATACCTCCAGAGAACAGTGTTATCGCATTTATGATTATCGCAACCTCAGTTGATGTTCCACACCACACCCCTGAACTTGTTCATGGAACATTTAACAATACTATGGCTTGTTTACACAATGCATGTCTTATACCTCAAGCTGATTGCCTCGACCCAGTCTGCCTGGCTACTGCTCCAAAGAGAAACAAATGTACAAAGGAAACTCAAAGCAAAACTTCTGTTACAAACCAGACCAAGACTCCTCAAGTTGGTACATCTCAACAAAGTCCATCTTCAGACTGCGACTTTCAAGACTTTGAAAATTTGGAATCTTTAAACGGAATCGGTCAAAGTTTGCTAAGAGGACAGCTACAAGACTTACTGGATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P10394	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1
P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P20825	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000010 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF17917 all species →	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR051320 all species →	Family	Viral Replication and Maturation Polyprotein	Interproscan
IPR041373 all species →	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33064 all species →	POL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap8.1412.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.