Detailed information of evm.model.Ap8.1425 in Astrangia poculata

Genomic Location: Ap8:16070969...16072303
NR annotation: CAH3044872.1, unnamed protein product [Porites lobata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000154 (this species only) · gene tree & orthology

 Pfam domain
No Pfam domain signature was recorded for evm.model.Ap8.1425 in Astrangia poculata.
 InterPro
InterPro termTypeDescriptionSource
IPR000358
all species →		FamilyRibonucleotide reductase small subunit familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23409
all species →		RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004748
all species →		Molecular Functionribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptorInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0009263
all species →		Biological Processdeoxyribonucleotide biosynthetic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap8.1425.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap8.1425 across 49 RNA-seq samples of Astrangia poculata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
18TPM > 0
4Conditions
495.8Max TPM
82.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 6 120.17 495.84
whole organism · heat control 12 6 103.26 488.70
whole organism · cold challenge 12 2 28.16 220.05
whole organism · heat challenge 11 4 71.12 375.36

Per sample · hover a bar for the full sample record

Show the sample table (49 samples)
SRA runConditionTissueDevelopmental stage TreatmentStudyTPM
SRR10674724 whole organism · cold control whole organism not recorded cold control SRP237293 495.84
SRR10674734 whole organism · cold control whole organism not recorded cold control SRP237293 409.47
SRR10674733 whole organism · cold control whole organism not recorded cold control SRP237293 343.06
SRR10674735 whole organism · cold control whole organism not recorded cold control SRP237293 235.51
SRR10674737 whole organism · cold control whole organism not recorded cold control SRP237293 137.59
SRR10674750 whole organism · cold control whole organism not recorded cold control SRP237293 60.92
SRR10674714 whole organism · cold control whole organism not recorded cold control SRP237293 0.00
SRR10674715 whole organism · cold control whole organism not recorded cold control SRP237293 0.00
SRR10674736 whole organism · cold control whole organism not recorded cold control SRP237293 0.00
SRR10674739 whole organism · cold control whole organism not recorded cold control SRP237293 0.00
SRR10674743 whole organism · cold control whole organism not recorded cold control SRP237293 0.00
SRR10674746 whole organism · cold control whole organism not recorded cold control SRP237293 0.00
SRR10674747 whole organism · cold control whole organism not recorded cold control SRP237293 0.00
SRR10674748 whole organism · cold control whole organism not recorded cold control SRP237293 0.00
SRR10674753 whole organism · heat control whole organism not recorded heat control SRP237293 488.70
SRR10674717 whole organism · heat control whole organism not recorded heat control SRP237293 326.95
SRR10674731 whole organism · heat control whole organism not recorded heat control SRP237293 141.38
SRR10674708 whole organism · heat control whole organism not recorded heat control SRP237293 139.27
SRR10674706 whole organism · heat control whole organism not recorded heat control SRP237293 71.86
SRR10674721 whole organism · heat control whole organism not recorded heat control SRP237293 70.91
SRR10674707 whole organism · heat control whole organism not recorded heat control SRP237293 0.00
SRR10674718 whole organism · heat control whole organism not recorded heat control SRP237293 0.00
SRR10674720 whole organism · heat control whole organism not recorded heat control SRP237293 0.00
SRR10674725 whole organism · heat control whole organism not recorded heat control SRP237293 0.00
SRR10674741 whole organism · heat control whole organism not recorded heat control SRP237293 0.00
SRR10674752 whole organism · heat control whole organism not recorded heat control SRP237293 0.00
SRR10674711 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 220.05
SRR10674730 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 117.90
SRR10674712 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674713 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674722 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674723 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674732 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674738 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674740 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674744 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674745 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674749 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674728 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 375.36
SRR10674742 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 165.92
SRR10674727 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 150.09
SRR10674754 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 90.92
SRR10674709 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 0.00
SRR10674710 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 0.00
SRR10674716 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 0.00
SRR10674719 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 0.00
SRR10674726 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 0.00
SRR10674729 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 0.00
SRR10674751 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 0.00

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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