Detailed information of evm.model.Ap8.144 in Astrangia poculata

Genomic Location: Ap8:1353988...1359485
NR annotation: XP_022792732.1, collagen alpha-1(X) chain-like isoform X2 [Stylophora pistillata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9XT48Lymphotoxin-alpha OS=Notamacropus eugenii OX=9315 GN=LTA PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000863 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01391
all species →		CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF00229
all species →		TNFTNF(Tumour Necrosis Factor) family DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006052
all species →		DomainTumour necrosis factor domainInterproscan
IPR008983
all species →		Homologous_superfamilyTumour necrosis factor-like domain superfamilyInterproscan
IPR008160
all species →		RepeatCollagen triple helix repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11471
all species →		TUMOR NECROSIS FACTOR FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005164
all species →		Molecular Functiontumor necrosis factor receptor bindingInterproscan
GO:0006955
all species →		Biological Processimmune responseInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap8.144.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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