Gene detail

Detailed information of evm.model.Ap8.158 in Astrangia poculata

Genomic Location: Ap8:1490987...1509426
NR annotation: XP_027048598.1, importin-5-like [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.158

atggtggccgtaatggcgagcgagcaacagcaattcgaatctcttgtttcccagctgatgtcccctgataataacatcaggaatcaagcagaggcacattatgatactattgatgaaccaacaaaaatcaaattccttattcagatgattagaacatcaggaatccctgaggttcgccaaatgtcagctgtgctcttgcgcaggatctactccagctcagtagatttttatgacaaacttgacccagcgttccaacaagagatgaaggataatttgcttaaggccattcaagaagaacaggtgcagacgatacgcaagaaagtttgtgatgctgtagctgaattatctagaagtcttcttgatgaggacggatataatcactggcaagaacttctaaagtttctgtttgaatgctgtaactcacaaaaaccagagctgaaggaaagtgcacttcatatttttgtatcttttcctggaatatttggaacacagcaagaacattacatgcaggttattaaacagatgctgtggcaatgtcttcaggatcaatcaagtcaacaggttcgtttcatgtcagcccgtgcctcagttgcttttattacagaccaagttgaagagatcaaacagagacaatttgttgagttagtcccaggaatagttcaggcggttcgcgagagtgcccaagcaagtgcagacgactctgtgttaaaatgtctgattgacttagcagacacctgtcccaagcttctcagggcaaacttggagcccattctggatctgatgctggagattgttcgtaacacaaaccttgttgaaagctggaggcatttatccttagagtgtgtagtgacattagctgagacagcaccagcaatgctaagaaaatgtcagaagcatattccaataatagttcccgagatgctggccatgatggttgatctggaagatgatccagagtggagtctgtctgatgaacttgatgatgacgatgctgaaagtaattctgtagcaggagaaagctctcttgacagactggcttgtggtttgggaggaaaaacagtcttgcctcatatcattgttacagtgccacagatgttacagaatgctgactggagatatcgtcacgccggtctgatggcaatctcagcagtaggtgaaggctgttacaaacaaatggaggcattactgccagacatagtcaacactgtcttgcccttcctgacggactcccacccgcgagtgaggtatgctgcctgcaatgctgtgggtcagctgtcaactgattttgctcaaggatttcaaaagaagtttcataccagagtgattccaggcctccttgttgttttggatgacacagccaatcctcgtgtccaggcacacgctgccgcagctctcgtcaatttctccgatgattgccccaagaatattcttgcatcttatctggataatatcctggctaaacttgaagctgtgctggcttctaaactaagggagcttgaacgcggtggtaagcttgttctggagcaggtcgtcaccaccattgccacagtggcagacaccgcagaagagaaattccttcattactatgatcggtttatgccaaacctcaagtacatcatgcagaatgcgctatcatctgactaccgcatgctgcgaggaaagactattgaatgcataagcttgattggtttggctgtaggaaaagacaagtttctgcctgatgccaatgaagtgatgcagttgttactcaagactcagacggagatggaagagctggaggctgatgatccacagatttcgtacatgatctcagcgtgggccagaatgtgcaagatatttggtacagagtttactcaataccttcctcttgtgatgccctcagtgatgaaagccgcgtcaatcaagcctgaagttgcagtcatcgatgctgatgatccaaagagtgggcagtattcggaagatgaaggctggcagtttataacgcttggtgatcagcaaaagtttggtatcaagaccgctggtctagaagacaagagcaccgcatgtcagatgttggtctgttacgccagagaacttaaagaaggattcgctccatacacagagcaggtcgtgaaactcatggtccccctcttgaaattctacttccacgatcttgtgcggacggctgctgcggaatctttgccttatctcttggagtgcgctaagatcaaaggggacgcgtatctgcgacagatgtgggccttcatgtgcccggaagtgttgaaggccatgagtgcggaaccggaaccggatgttcaaattttgatcatggatgctctggcgcggtgtatagagactctaggcgtggggtgtatgactcctgattatttcactgagcttggcaccatgctgcatgatattatagacagtcataaaaacagacaggtcgaaagacagcagagaagaaaggaagaagattacgacgaagaggtggaagaggacctgcaagacgagcacgagaccgatgttcacatcttgagcaaggtttccgatataatgcacgcgttgttcggcacacacaaagaagctgctctgcctttctttgaacaactcctcccggattttcactccttactggcccctagcggatccgctcaagacaagcaatggtcactgtgtgtctttgatgatgtcatagaacacactggctcggcgtcatttaagtaccaggagtattttttgcgaccaatgatgaattacgtgttagacagaaatgctgatgttcgacaggctgcgtgttacggctgcggagtaatggctcagtatggcggagaggagtatgtctcagcttgtgcagaggttgtcccagtgctttttcaagccatcaaagccgaagattccagaagtcgagaaaatgtgaatgcaacagaaaacgccatttcagccgtggcaaaaatatgtaaatacaatcgtggaaatatcgcgttaaacgaagtgattccggcgctactcgcgacactgccgatcacagaagataaagaagaagcgcctcatgtgtatggatacgtctgtgatttgattgaagaaaacaaccctcttgttctgggaacgaacaacagtaatctgccgcgaatacttcaaatttttgctgagctgtttattaatgacgtactaagcggtgacgaggcggcccggaaacgagttcttgccatcatacgacaaatacagagcgctgctgaaatgtggacggcttgtgtcggacaactcagtgaactccaacaggaagctttgaaacaagcgctcgaggcagaaagctga

Transcript

evm.model.Ap8.158

AATATGGTGGCCGTAATGGCGAGCGAGCAACAGCAATTCGAATCTCTTGTTTCCCAGCTGATGTCCCCTGATAATAACATCAGGAATCAAGCAGAGGCACATTATGATACTATTGATGAACCAACAAAAATCAAATTCCTTATTCAGATGATTAGAACATCAGGAATCCCTGAGGTTCGCCAAATGTCAGCTGTGCTCTTGCGCAGGATCTACTCCAGCTCAGTAGATTTTTATGACAAACTTGACCCAGCGTTCCAACAAGAGATGAAGGATAATTTGCTTAAGGCCATTCAAGAAGAACAGGTGCAGACGATACGCAAGAAAGTTTGTGATGCTGTAGCTGAATTATCTAGAAGTCTTCTTGATGAGGACGGATATAATCACTGGCAAGAACTTCTAAAGTTTCTGTTTGAATGCTGTAACTCACAAAAACCAGAGCTGAAGGAAAGTGCACTTCATATTTTTGTATCTTTTCCTGGAATATTTGGAACACAGCAAGAACATTACATGCAGGTTATTAAACAGATGCTGTGGCAATGTCTTCAGGATCAATCAAGTCAACAGGTTCGTTTCATGTCAGCCCGTGCCTCAGTTGCTTTTATTACAGACCAAGTTGAAGAGATCAAACAGAGACAATTTGTTGAGTTAGTCCCAGGAATAGTTCAGGCGGTTCGCGAGAGTGCCCAAGCAAGTGCAGACGACTCTGTGTTAAAATGTCTGATTGACTTAGCAGACACCTGTCCCAAGCTTCTCAGGGCAAACTTGGAGCCCATTCTGGATCTGATGCTGGAGATTGTTCGTAACACAAACCTTGTTGAAAGCTGGAGGCATTTATCCTTAGAGTGTGTAGTGACATTAGCTGAGACAGCACCAGCAATGCTAAGAAAATGTCAGAAGCATATTCCAATAATAGTTCCCGAGATGCTGGCCATGATGGTTGATCTGGAAGATGATCCAGAGTGGAGTCTGTCTGATGAACTTGATGATGACGATGCTGAAAGTAATTCTGTAGCAGGAGAAAGCTCTCTTGACAGACTGGCTTGTGGTTTGGGAGGAAAAACAGTCTTGCCTCATATCATTGTTACAGTGCCACAGATGTTACAGAATGCTGACTGGAGATATCGTCACGCCGGTCTGATGGCAATCTCAGCAGTAGGTGAAGGCTGTTACAAACAAATGGAGGCATTACTGCCAGACATAGTCAACACTGTCTTGCCCTTCCTGACGGACTCCCACCCGCGAGTGAGGTATGCTGCCTGCAATGCTGTGGGTCAGCTGTCAACTGATTTTGCTCAAGGATTTCAAAAGAAGTTTCATACCAGAGTGATTCCAGGCCTCCTTGTTGTTTTGGATGACACAGCCAATCCTCGTGTCCAGGCACACGCTGCCGCAGCTCTCGTCAATTTCTCCGATGATTGCCCCAAGAATATTCTTGCATCTTATCTGGATAATATCCTGGCTAAACTTGAAGCTGTGCTGGCTTCTAAACTAAGGGAGCTTGAACGCGGTGGTAAGCTTGTTCTGGAGCAGGTCGTCACCACCATTGCCACAGTGGCAGACACCGCAGAAGAGAAATTCCTTCATTACTATGATCGGTTTATGCCAAACCTCAAGTACATCATGCAGAATGCGCTATCATCTGACTACCGCATGCTGCGAGGAAAGACTATTGAATGCATAAGCTTGATTGGTTTGGCTGTAGGAAAAGACAAGTTTCTGCCTGATGCCAATGAAGTGATGCAGTTGTTACTCAAGACTCAGACGGAGATGGAAGAGCTGGAGGCTGATGATCCACAGATTTCGTACATGATCTCAGCGTGGGCCAGAATGTGCAAGATATTTGGTACAGAGTTTACTCAATACCTTCCTCTTGTGATGCCCTCAGTGATGAAAGCCGCGTCAATCAAGCCTGAAGTTGCAGTCATCGATGCTGATGATCCAAAGAGTGGGCAGTATTCGGAAGATGAAGGCTGGCAGTTTATAACGCTTGGTGATCAGCAAAAGTTTGGTATCAAGACCGCTGGTCTAGAAGACAAGAGCACCGCATGTCAGATGTTGGTCTGTTACGCCAGAGAACTTAAAGAAGGATTCGCTCCATACACAGAGCAGGTCGTGAAACTCATGGTCCCCCTCTTGAAATTCTACTTCCACGATCTTGTGCGGACGGCTGCTGCGGAATCTTTGCCTTATCTCTTGGAGTGCGCTAAGATCAAAGGGGACGCGTATCTGCGACAGATGTGGGCCTTCATGTGCCCGGAAGTGTTGAAGGCCATGAGTGCGGAACCGGAACCGGATGTTCAAATTTTGATCATGGATGCTCTGGCGCGGTGTATAGAGACTCTAGGCGTGGGGTGTATGACTCCTGATTATTTCACTGAGCTTGGCACCATGCTGCATGATATTATAGACAGTCATAAAAACAGACAGGTCGAAAGACAGCAGAGAAGAAAGGAAGAAGATTACGACGAAGAGGTGGAAGAGGACCTGCAAGACGAGCACGAGACCGATGTTCACATCTTGAGCAAGGTTTCCGATATAATGCACGCGTTGTTCGGCACACACAAAGAAGCTGCTCTGCCTTTCTTTGAACAACTCCTCCCGGATTTTCACTCCTTACTGGCCCCTAGCGGATCCGCTCAAGACAAGCAATGGTCACTGTGTGTCTTTGATGATGTCATAGAACACACTGGCTCGGCGTCATTTAAGTACCAGGAGTATTTTTTGCGACCAATGATGAATTACGTGTTAGACAGAAATGCTGATGTTCGACAGGCTGCGTGTTACGGCTGCGGAGTAATGGCTCAGTATGGCGGAGAGGAGTATGTCTCAGCTTGTGCAGAGGTTGTCCCAGTGCTTTTTCAAGCCATCAAAGCCGAAGATTCCAGAAGTCGAGAAAATGTGAATGCAACAGAAAACGCCATTTCAGCCGTGGCAAAAATATGTAAATACAATCGTGGAAATATCGCGTTAAACGAAGTGATTCCGGCGCTACTCGCGACACTGCCGATCACAGAAGATAAAGAAGAAGCGCCTCATGTGTATGGATACGTCTGTGATTTGATTGAAGAAAACAACCCTCTTGTTCTGGGAACGAACAACAGTAATCTGCCGCGAATACTTCAAATTTTTGCTGAGCTGTTTATTAATGACGTACTAAGCGGTGACGAGGCGGCCCGGAAACGAGTTCTTGCCATCATACGACAAATACAGAGCGCTGCTGAAATGTGGACGGCTTGTGTCGGACAACTCAGTGAACTCCAACAGGAAGCTTTGAAACAAGCGCTCGAGGCAGAAAGCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O00410	Importin-5 OS=Homo sapiens OX=9606 GN=IPO5 PE=1 SV=4
Q8BKC5	Importin-5 OS=Mus musculus OX=10090 GN=Ipo5 PE=1 SV=3
O60518	Ran-binding protein 6 OS=Homo sapiens OX=9606 GN=RANBP6 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004386 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18829 all species →	Importin_rep_6	Importin repeat 6	Repeat	Interproscan
PF13513 all species →	HEAT_EZ	HEAT-like repeat	Repeat	Interproscan
PF18808 all species →	Importin_rep_4	Importin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR041389 all species →	Repeat	Importin repeat 6	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR041653 all species →	Repeat	Importin repeat 4	Interproscan
IPR040122 all species →	Family	Importin beta family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10527 all species →	IMPORTIN BETA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0008139 all species →	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0061608 all species →	Molecular Function	nuclear import signal receptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20222	IPO5, KPNB3, RANBP5; importin-5	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.