Detailed information of evm.model.Ap8.173 in Astrangia poculata

Genomic Location: Ap8:1675729...1685700
NR annotation: KAJ7351024.1, hypothetical protein OS493_037206 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O46043Poly(ADP-ribose) glycohydrolase OS=Drosophila melanogaster OX=7227 GN=Parg PE=1 SV=3
Q9SKB3Poly(ADP-ribose) glycohydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=PARG1 PE=1 SV=2
Q86W56Poly(ADP-ribose) glycohydrolase OS=Homo sapiens OX=9606 GN=PARG PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002028 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05028
all species →		PARG_cat_CPoly (ADP-ribose) glycohydrolase (PARG), Macro domain foldDomainInterproscan
PF20811
all species →		PARG_cat_NPoly (ADP-ribose) glycohydrolase (PARG), helical domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007724
all species →		FamilyPoly(ADP-ribose) glycohydrolaseInterproscan
IPR046372
all species →		DomainPoly (ADP-ribose) glycohydrolase (PARG), catalytic domainInterproscan
IPR048362
all species →		DomainPoly (ADP-ribose) glycohydrolase, helical domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12837
all species →		POLY ADP-RIBOSE GLYCOHYDROLASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004649
all species →		Molecular Functionpoly(ADP-ribose) glycohydrolase activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0005975
all species →		Biological Processcarbohydrate metabolic processInterproscan
GO:0006282
all species →		Biological Processregulation of DNA repairInterproscan
GO:0009225
all species →		Biological Processnucleotide-sugar metabolic processInterproscan
GO:1990966
all species →		Biological ProcessATP generation from poly-ADP-D-riboseInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K07759PARG; poly(ADP-ribose) glycohydrolaseEC:3.2.1.143
Base excision repairko03410deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap8.173 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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