Gene detail

Detailed information of evm.model.Ap8.1739 in Astrangia poculata

Genomic Location: Ap8:19204718...19259193
NR annotation: XP_020611050.1, E3 ubiquitin-protein ligase TRIP12-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.1739

atgactgctgattacaatggccgattgggacacacattaattagtgaatcagtgatcataagagtcatcgaaggcgagaaggttgaccatgaaacaataatttcctgtttgtgtattcaccagacgtcacacgcacctcgtaagagatctaaacctagccagcctaggcgatcatcttcaacaagcaagagccagcctactgtaaactgtacatacaatttaagatctcgcagttcatcagcaagccctcgttccagcaccagtgattgcacaatccccagtagtaagccagtctccctctcccaagagaagcaagaatccaaaaggaaacctgtcactgtgccctcatttgcttcaactttcacaaagtcaaagcaaacacagccggcctcattatcagccattggtaatttggtgactccacaactctccacacctcatctaagcagttcgtcttcatcagccattggtaacttatcatcaacctccaagtcttcctcccgtggaagacgtgctgcgtcagcatcgtcactctctgataagactacggcagcaaatcaatccacttctcagaccacctgtgcaccatcacgaagttggagaagaagtgacccgcctgagcctagcacaggcttaaggcggtcacagagactcaaagagacaacgggatcctgtgctagcaatagtcggcgtggaccacaggggaagaagcagtcgtggacacgccgacagtcacccagtatgtcagctgacaatggacctcaagaccctggttcttcagatgcagctcatggtagtgttgaagattctgttccttctgctagtggtgaggcctcaagaagtgaactggagggttctggcagccttgaagatatggagctgaaagatggcgagttatcaagattacaagctcttctggaggcacgaggtgttccttctcatctgattggctcactaggaccccgtatgcatcaactactgcatcgaacaataagttccggctcaggtggtaaagtgcaacagatgttaacagggatccagtcgtctgatgagggacaacagcttcagtctgttattgaaatgtgccagttcctagtcatggggaatgaagagagcctcgttggttttcctgtgaaacaagttgtgccagcacttgtaaacttgctttcaatggaacataactttgatatgatgaatcatggctgccgtgccctgacatatctgatggaagctcttcccaggtcaacagctgtagtagtggaagcagtacctgtgtttattgaaaagctacaagttatacagtgtatggatgtcgcagagcaagcactgacggctttagcaatgttgtcaagaagacatggaaaagctatcttgcaagctggaggaatgtctgcttgtcttttgttcttggatttcttttcaatatctgctcagaggtcagcactgtctgtggctgctaactgttgtcacagcattggtgtgggtgactttcatcttgttgcagattcaatcccgatcttaagtggaagattgcaacatcaggataaaaagtctgtagaaagctgttgtgtggcatttgcaagactagtggatagctttcatactaatgagaaacatcttgaagagcttgctgctcatggacttctcaataacctacaacagctgctgatgatggctccaccagttattagtaccagtacgtttgtgatggtggttcgcatgctggccgtgctatgttccaacagtccagcaattgctgtacaactcctgagacaaaatgtgtcagatacaattctatatttgttgctgggtaccacagagcctgcagagatagaaaatgctgagttgttatcacgaagtccccaagaattctttgaaataacttgcttcatcagtgaacttctaccaaaattgccatcaagtggtatattcacagtagatgtcttgctgtgcaagccacaacagaagtcagagcagggtctgtggcagtggagagacgacagagggctgtggcacacgtattcctggattgacagcaagattattgaggctgcatatcagagtggtgaggatgagttaactctcaccacccttggtagaacatacacagtggacttcaacagtatgcagcagacaaatgaagatactggaacatcaaggcagatacagcgatgtccaggtggtacagagacatctacggcctcgtccaagacagatgaagcaaaagtcacaaggaatgatgaacgcttagtgattttatgcgaggaagctgaattagcttcatcttatacttgtggaatgttttctgctttgtacaagatattcagctcttcagttggacctgccatccgacacaaatgtgtgaacgctattctgagggtgctgtatcatgcccctcctgaacttttaggtgtggtgctcaaaagacatccaatctcaagtttgataggtggaatgcttcagtcaacagacttgagagtcattactaatgctcttcaaatggcagaaattgtcatgcagaaattacctgatgttttccatgtatcattcagaagagaaggagtgatgcatagagttagagacttggccaatggcttgctggcaagtaaagcaaatgtatcagaaaagaactgttcatcagagtgtttggcaaacagcagtgaaaatgaaagcccaggacagagagctactgaaaatgcatcagcattaccagtgaccaggaggttaggagatgtcttgcggaggaagcgttattccaaaagacctggcagaggcaaggccacaagctttcctggcacgtctgaagcacatgtagaagttaatcggcagcagattggcggaccgtcttcaaagacaatgctccatgaaagcagatttgcttttctggcatctcagtcatcaacaagattgaattcaaaatccacattactcgcagagagaccagcaaagatggagacatcagctgggaacagcatttcagaaaaccgagaaaagattttgaactggatcaaagaccaagcatcaaagttttgtgctgagtactttgatcaacaaaagggagattctcaccctgcactcagtgtgctgcgacagttaaagagtgcttcagaagaattgactttagataaacaaaattttctatcagcactcaaggaagtttccaacgtcctgactaatgaagacaacagtgcatgtgcatttgagatccttcacagtggactggtaccaaatctccttagatatctaacctctacagaaggcagtgatgctctttctcaggaaaaaagactaagaatatttttccatgtttttatgggattgccggagacaagttcaactgaagatttgaaaattacgagtgaacccaacatagcttccatggctgcgctgatacagaaactacatttgtgcattaaccagctagaacagcttccagtcaaagttcacgacacaccaggaggagctgttgcgacaaggggatcacaagctctcagattcttcagttctcaccaaatcaagtgccttcttcaaagacaccctgattgtgagggcttgcggcagtggaaacgtggtccagttaaaattgatcctctagcacttgttcaggccattgaaaggtatttagttgttcgaggctatggaaagaggcgagagaatccagatgatgatggaagtgaagatgatgggtcagatgatgacattgatgagtctttggcagctgaactacaaggacaaaataactcaaggcatcaattggagattttattaggagatcatatacttccttacaacatgacagtctatcaagctatcaagcagtttgctcagtgtgacgacgacaaagactttgatgatgatcacgggggcatccttggcagacctagtatctgggtctcaacacatacaatatggtttcggcctctgagtcaaaaccaaaaggaacagcaaagtgtaaatagcagtaaagccaagtgtggtaccacaagtgctgcttcaaaagcctccaggaagacatggaaggaagatgattcagaagtgtccataagtcagctccttttggattgtgaacctcagagctttaccaccagtgatccaagtattgaagtgattagtcttatgaaagctttgcatgttcttaacctccactggacaacactttatgagggacaaagccgcagagcgtttttatcttctaatgaatttataaacaataagcttgcggcaaaaattacccggcaattgcaagatcccatcacagtaataacaggcaatttccctgcatgggtagaagaactaccacggaaatgtccattcctgtttccttttgaatgtcgacaacagttgttttactgcactgcgatggatagagacagggctctcagtaaactacaggagacattaccagagcttatgaatacagacgcatcggatcgtgtagcaccgagatttgacagaaaaaagcacactgtttctcgtgtgggactgttagatcaggctgagaagcttatcggtgaacttggtagctcacagtctgtactggaaatacaatacgagggcgaggttgggaccggacttggccccacactggaattttatgctctgatttcacaagaatttcaacgtgctgacctggcgatgtggagaggagaacacatgctgcctcctggaagaacgggatttggagatgacgtttcgtatgtttactccccatctggtctttatccagccccagtatcacgcaacgctaaagtggcgagcatgaccaagctgtgctccaagtttcagttccttggcaaatttctggcacgcgccataatggactttagagtcctggacatcccgttctgtcagatactgtacaaatggctgctgaatcaagaaggaacattagacctgggtgatctagctgctgtggacccggtactggcgcagtcactgactcagctgcagcaggtggtacagaggaagcggcagctggagcaggactcctctcacacggcagacagcagacaactagctgtggaaagtcttacactggatggaacacctatcgaggatctgggactgtcatttgcactgcctggtcatccagatattgaactaaagcgcggtggaaaggacatcacggtcactattcatgatttagaagaatacatcaagctggttgtacagtggactcttgttaccggtgtcagacgtcaaatggatgctctccttgaaggctttaactccgtgctgcctctatcaaacctaactagcttttcttacactgagatggagctggtcctttgtggtaatgtggctgagaaatgggacatcaaatgtctcgtggagagctgtcgacctgaccatggctacacccatgatagccgtgccgtgaagattttgtttgaaattctcagctgttacacacaggaagagcagagactgtttttacagtttgtcacaggcagcccaaggttacctgtaggaggcctgcgcagtcttaacccaccactgaccatagttcgcaagtcgtttgagcctcctctgtgtgctgacagctacttgccgtccgtcatgacctgtgttaactacttgaagctgccagactactccagtaaagacatcatggccagtaaactcaaactggcagctttggagggacagcgctcattccacttgtcttga

Transcript

evm.model.Ap8.1739

ATGACTGCTGATTACAATGGCCGATTGGGACACACATTAATTAGTGAATCAGTGATCATAAGAGTCATCGAAGGCGAGAAGGTTGACCATGAAACAATAATTTCCTGTTTGTGTATTCACCAGACGTCACACGCACCTCGTAAGAGATCTAAACCTAGCCAGCCTAGGCGATCATCTTCAACAAGCAAGAGCCAGCCTACTGTAAACTGTACATACAATTTAAGATCTCGCAGTTCATCAGCAAGCCCTCGTTCCAGCACCAGTGATTGCACAATCCCCAGTAGTAAGCCAGTCTCCCTCTCCCAAGAGAAGCAAGAATCCAAAAGGAAACCTGTCACTGTGCCCTCATTTGCTTCAACTTTCACAAAGTCAAAGCAAACACAGCCGGCCTCATTATCAGCCATTGGTAATTTGGTGACTCCACAACTCTCCACACCTCATCTAAGCAGTTCGTCTTCATCAGCCATTGGTAACTTATCATCAACCTCCAAGTCTTCCTCCCGTGGAAGACGTGCTGCGTCAGCATCGTCACTCTCTGATAAGACTACGGCAGCAAATCAATCCACTTCTCAGACCACCTGTGCACCATCACGAAGTTGGAGAAGAAGTGACCCGCCTGAGCCTAGCACAGGCTTAAGGCGGTCACAGAGACTCAAAGAGACAACGGGATCCTGTGCTAGCAATAGTCGGCGTGGACCACAGGGGAAGAAGCAGTCGTGGACACGCCGACAGTCACCCAGTATGTCAGCTGACAATGGACCTCAAGACCCTGGTTCTTCAGATGCAGCTCATGGTAGTGTTGAAGATTCTGTTCCTTCTGCTAGTGGTGAGGCCTCAAGAAGTGAACTGGAGGGTTCTGGCAGCCTTGAAGATATGGAGCTGAAAGATGGCGAGTTATCAAGATTACAAGCTCTTCTGGAGGCACGAGGTGTTCCTTCTCATCTGATTGGCTCACTAGGACCCCGTATGCATCAACTACTGCATCGAACAATAAGTTCCGGCTCAGGTGGTAAAGTGCAACAGATGTTAACAGGGATCCAGTCGTCTGATGAGGGACAACAGCTTCAGTCTGTTATTGAAATGTGCCAGTTCCTAGTCATGGGGAATGAAGAGAGCCTCGTTGGTTTTCCTGTGAAACAAGTTGTGCCAGCACTTGTAAACTTGCTTTCAATGGAACATAACTTTGATATGATGAATCATGGCTGCCGTGCCCTGACATATCTGATGGAAGCTCTTCCCAGGTCAACAGCTGTAGTAGTGGAAGCAGTACCTGTGTTTATTGAAAAGCTACAAGTTATACAGTGTATGGATGTCGCAGAGCAAGCACTGACGGCTTTAGCAATGTTGTCAAGAAGACATGGAAAAGCTATCTTGCAAGCTGGAGGAATGTCTGCTTGTCTTTTGTTCTTGGATTTCTTTTCAATATCTGCTCAGAGGTCAGCACTGTCTGTGGCTGCTAACTGTTGTCACAGCATTGGTGTGGGTGACTTTCATCTTGTTGCAGATTCAATCCCGATCTTAAGTGGAAGATTGCAACATCAGGATAAAAAGTCTGTAGAAAGCTGTTGTGTGGCATTTGCAAGACTAGTGGATAGCTTTCATACTAATGAGAAACATCTTGAAGAGCTTGCTGCTCATGGACTTCTCAATAACCTACAACAGCTGCTGATGATGGCTCCACCAGTTATTAGTACCAGTACGTTTGTGATGGTGGTTCGCATGCTGGCCGTGCTATGTTCCAACAGTCCAGCAATTGCTGTACAACTCCTGAGACAAAATGTGTCAGATACAATTCTATATTTGTTGCTGGGTACCACAGAGCCTGCAGAGATAGAAAATGCTGAGTTGTTATCACGAAGTCCCCAAGAATTCTTTGAAATAACTTGCTTCATCAGTGAACTTCTACCAAAATTGCCATCAAGTGGTATATTCACAGTAGATGTCTTGCTGTGCAAGCCACAACAGAAGTCAGAGCAGGGTCTGTGGCAGTGGAGAGACGACAGAGGGCTGTGGCACACGTATTCCTGGATTGACAGCAAGATTATTGAGGCTGCATATCAGAGTGGTGAGGATGAGTTAACTCTCACCACCCTTGGTAGAACATACACAGTGGACTTCAACAGTATGCAGCAGACAAATGAAGATACTGGAACATCAAGGCAGATACAGCGATGTCCAGGTGGTACAGAGACATCTACGGCCTCGTCCAAGACAGATGAAGCAAAAGTCACAAGGAATGATGAACGCTTAGTGATTTTATGCGAGGAAGCTGAATTAGCTTCATCTTATACTTGTGGAATGTTTTCTGCTTTGTACAAGATATTCAGCTCTTCAGTTGGACCTGCCATCCGACACAAATGTGTGAACGCTATTCTGAGGGTGCTGTATCATGCCCCTCCTGAACTTTTAGGTGTGGTGCTCAAAAGACATCCAATCTCAAGTTTGATAGGTGGAATGCTTCAGTCAACAGACTTGAGAGTCATTACTAATGCTCTTCAAATGGCAGAAATTGTCATGCAGAAATTACCTGATGTTTTCCATGTATCATTCAGAAGAGAAGGAGTGATGCATAGAGTTAGAGACTTGGCCAATGGCTTGCTGGCAAGTAAAGCAAATGTATCAGAAAAGAACTGTTCATCAGAGTGTTTGGCAAACAGCAGTGAAAATGAAAGCCCAGGACAGAGAGCTACTGAAAATGCATCAGCATTACCAGTGACCAGGAGGTTAGGAGATGTCTTGCGGAGGAAGCGTTATTCCAAAAGACCTGGCAGAGGCAAGGCCACAAGCTTTCCTGGCACGTCTGAAGCACATGTAGAAGTTAATCGGCAGCAGATTGGCGGACCGTCTTCAAAGACAATGCTCCATGAAAGCAGATTTGCTTTTCTGGCATCTCAGTCATCAACAAGATTGAATTCAAAATCCACATTACTCGCAGAGAGACCAGCAAAGATGGAGACATCAGCTGGGAACAGCATTTCAGAAAACCGAGAAAAGATTTTGAACTGGATCAAAGACCAAGCATCAAAGTTTTGTGCTGAGTACTTTGATCAACAAAAGGGAGATTCTCACCCTGCACTCAGTGTGCTGCGACAGTTAAAGAGTGCTTCAGAAGAATTGACTTTAGATAAACAAAATTTTCTATCAGCACTCAAGGAAGTTTCCAACGTCCTGACTAATGAAGACAACAGTGCATGTGCATTTGAGATCCTTCACAGTGGACTGGTACCAAATCTCCTTAGATATCTAACCTCTACAGAAGGCAGTGATGCTCTTTCTCAGGAAAAAAGACTAAGAATATTTTTCCATGTTTTTATGGGATTGCCGGAGACAAGTTCAACTGAAGATTTGAAAATTACGAGTGAACCCAACATAGCTTCCATGGCTGCGCTGATACAGAAACTACATTTGTGCATTAACCAGCTAGAACAGCTTCCAGTCAAAGTTCACGACACACCAGGAGGAGCTGTTGCGACAAGGGGATCACAAGCTCTCAGATTCTTCAGTTCTCACCAAATCAAGTGCCTTCTTCAAAGACACCCTGATTGTGAGGGCTTGCGGCAGTGGAAACGTGGTCCAGTTAAAATTGATCCTCTAGCACTTGTTCAGGCCATTGAAAGGTATTTAGTTGTTCGAGGCTATGGAAAGAGGCGAGAGAATCCAGATGATGATGGAAGTGAAGATGATGGGTCAGATGATGACATTGATGAGTCTTTGGCAGCTGAACTACAAGGACAAAATAACTCAAGGCATCAATTGGAGATTTTATTAGGAGATCATATACTTCCTTACAACATGACAGTCTATCAAGCTATCAAGCAGTTTGCTCAGTGTGACGACGACAAAGACTTTGATGATGATCACGGGGGCATCCTTGGCAGACCTAGTATCTGGGTCTCAACACATACAATATGGTTTCGGCCTCTGAGTCAAAACCAAAAGGAACAGCAAAGTGTAAATAGCAGTAAAGCCAAGTGTGGTACCACAAGTGCTGCTTCAAAAGCCTCCAGGAAGACATGGAAGGAAGATGATTCAGAAGTGTCCATAAGTCAGCTCCTTTTGGATTGTGAACCTCAGAGCTTTACCACCAGTGATCCAAGTATTGAAGTGATTAGTCTTATGAAAGCTTTGCATGTTCTTAACCTCCACTGGACAACACTTTATGAGGGACAAAGCCGCAGAGCGTTTTTATCTTCTAATGAATTTATAAACAATAAGCTTGCGGCAAAAATTACCCGGCAATTGCAAGATCCCATCACAGTAATAACAGGCAATTTCCCTGCATGGGTAGAAGAACTACCACGGAAATGTCCATTCCTGTTTCCTTTTGAATGTCGACAACAGTTGTTTTACTGCACTGCGATGGATAGAGACAGGGCTCTCAGTAAACTACAGGAGACATTACCAGAGCTTATGAATACAGACGCATCGGATCGTGTAGCACCGAGATTTGACAGAAAAAAGCACACTGTTTCTCGTGTGGGACTGTTAGATCAGGCTGAGAAGCTTATCGGTGAACTTGGTAGCTCACAGTCTGTACTGGAAATACAATACGAGGGCGAGGTTGGGACCGGACTTGGCCCCACACTGGAATTTTATGCTCTGATTTCACAAGAATTTCAACGTGCTGACCTGGCGATGTGGAGAGGAGAACACATGCTGCCTCCTGGAAGAACGGGATTTGGAGATGACGTTTCGTATGTTTACTCCCCATCTGGTCTTTATCCAGCCCCAGTATCACGCAACGCTAAAGTGGCGAGCATGACCAAGCTGTGCTCCAAGTTTCAGTTCCTTGGCAAATTTCTGGCACGCGCCATAATGGACTTTAGAGTCCTGGACATCCCGTTCTGTCAGATACTGTACAAATGGCTGCTGAATCAAGAAGGAACATTAGACCTGGGTGATCTAGCTGCTGTGGACCCGGTACTGGCGCAGTCACTGACTCAGCTGCAGCAGGTGGTACAGAGGAAGCGGCAGCTGGAGCAGGACTCCTCTCACACGGCAGACAGCAGACAACTAGCTGTGGAAAGTCTTACACTGGATGGAACACCTATCGAGGATCTGGGACTGTCATTTGCACTGCCTGGTCATCCAGATATTGAACTAAAGCGCGGTGGAAAGGACATCACGGTCACTATTCATGATTTAGAAGAATACATCAAGCTGGTTGTACAGTGGACTCTTGTTACCGGTGTCAGACGTCAAATGGATGCTCTCCTTGAAGGCTTTAACTCCGTGCTGCCTCTATCAAACCTAACTAGCTTTTCTTACACTGAGATGGAGCTGGTCCTTTGTGGTAATGTGGCTGAGAAATGGGACATCAAATGTCTCGTGGAGAGCTGTCGACCTGACCATGGCTACACCCATGATAGCCGTGCCGTGAAGATTTTGTTTGAAATTCTCAGCTGTTACACACAGGAAGAGCAGAGACTGTTTTTACAGTTTGTCACAGGCAGCCCAAGGTTACCTGTAGGAGGCCTGCGCAGTCTTAACCCACCACTGACCATAGTTCGCAAGTCGTTTGAGCCTCCTCTGTGTGCTGACAGCTACTTGCCGTCCGTCATGACCTGTGTTAACTACTTGAAGCTGCCAGACTACTCCAGTAAAGACATCATGGCCAGTAAACTCAAACTGGCAGCTTTGGAGGGACAGCGCTCATTCCACTTGTCTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B4F6W9	E3 ubiquitin-protein ligase TRIP12 OS=Xenopus tropicalis OX=8364 GN=trip12 PE=2 SV=1
F1LP64	E3 ubiquitin-protein ligase TRIP12 OS=Rattus norvegicus OX=10116 GN=Trip12 PE=1 SV=1
G5E870	E3 ubiquitin-protein ligase TRIP12 OS=Mus musculus OX=10090 GN=Trip12 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003745 (this species only)
Ubiquitin family	E3\|E3 activity\|HECT · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00632 all species →	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan
PF02825 all species →	WWE	WWE domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000569 all species →	Domain	HECT domain	Interproscan
IPR037197 all species →	Homologous_superfamily	WWE domain superfamily	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR004170 all species →	Domain	WWE domain	Interproscan
IPR035983 all species →	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan
IPR018123 all species →	Domain	WWE domain, subgroup	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR045322 all species →	Family	E3 ubiquitin-protein ligase HECTD1/TRIP12-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45670 all species →	E3 UBIQUITIN-PROTEIN LIGASE TRIP12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016607 all species →	Cellular Component	nuclear speck	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10590	TRIP12; E3 ubiquitin-protein ligase TRIP12	EC:2.3.2.26	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.