Genomic Location: Ap8:1761142...1777201
NR annotation: CAH3175518.1, unnamed protein product [Porites lobata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap8.180 |
| Transcript |
| evm.model.Ap8.180 |
| Protein |
| evm.model.Ap8.180 |
| UniProt accession | Description |
|---|---|
| Q0V9R4 | Coiled-coil domain-containing protein 39 OS=Xenopus tropicalis OX=8364 GN=ccdc39 PE=2 SV=1 |
| Q9UFE4 | Coiled-coil domain-containing protein 39 OS=Homo sapiens OX=9606 GN=CCDC39 PE=1 SV=3 |
| E2R1I5 | Coiled-coil domain-containing protein 39 OS=Canis lupus familiaris OX=9615 GN=CCDC39 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006393 (this species only) · gene tree & orthology |
evm.model.Ap8.180 in Astrangia poculata.| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR033290 all species → | Family | Coiled-coil domain-containing protein 39 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR18962 all species → | COILED-COIL DOMAIN-CONTAINING PROTEIN 39 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003341 all species → | Biological Process | cilium movement | Interproscan |
| GO:0005930 all species → | Cellular Component | axoneme | Interproscan |
| GO:0036159 all species → | Biological Process | inner dynein arm assembly | Interproscan |
| GO:0060285 all species → | Biological Process | cilium-dependent cell motility | Interproscan |
| GO:0060287 all species → | Biological Process | epithelial cilium movement involved in determination of left/right asymmetry | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K23729 | CCDC39; coiled-coil domain-containing protein 39 | - | Domain-containing proteins not elsewhere classified | ko04990 | deepkoala |
Transcript abundance of evm.model.Ap8.180 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
