Gene detail

Detailed information of evm.model.Ap8.1938 in Astrangia poculata

Genomic Location: Ap8:21394753...21407471
NR annotation: XP_020625277.1, tetratricopeptide repeat protein 28-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.1938

atggagaataatcgctcttttctgagcgtatttggcgcaacagccatggatcaaactgaagtcccatcaccttctgttggacaacttgattttgatgatgacaccttacgagcgatagcaaaagtgtacctggatgaaggtgacaaagaatatggaaataaagaagctttaaacgccatatacttctacactgaaggacttcaagtgaactgcaaggatgacgaactgaatgccaaactgtactgcaacagagcaactgctaattttcatttaggcaattaccaagaagcccttaaagatgcaacagctgctgtgaagttggaaccgacttcgattgaagccattgaaacaggagcaactgtttgtgttcagctacagtgttatgaagaagccataacctggtgtgacatgggattggcaattgacaagactagtaagacattaacagatttgtgggcctggtgtattagtgatcaaaatagttcccaagaaataaaacgaccaaacacgaagagtaggccaaccactcagactgtaaaaagcctgaaaagtgaagttcttcccaagaccttcaaagacgttcaaaaggtaggagacacggctggaaaaggacgtacttatggtgatcttggttacgcttctggcaatctgggaggtttcaaacaagccatcgagtaccttgaacgtgatttaaaaattgccaaagaactacgagacaaagctgaagaaggtcgtgcttatggtaatcttgccatcgcttatggcagtatgggatatttggaaaaagctatcgagtacaatgggcggcatcttcaaattgctaaagaagtaggcgatcatgctggagaaaaacgtgcttatggcaatcttatcaacgcttattacagtctgggagatttcaaaaaagccatcgattaccatgaaagttatctaaaaactttccaagaagtagaaaacaaagccggggaagcaaaagcttataaaaaacttggcatcgcttatcacagtctaggaaagttccaaaaagccatcgaataccatgaacgtcaccttgaaatcgccaaagaagatagggatcaagctgaagaaagacatgcttataataatcttggttgcgtttatgtcgatctgggtgatttcagaaaagccgtcgagtaccttgaacgtggtctaaaaatggccaaagaagtaggagacaaagttgacgaaggaggtgcttgtggtaatcttggcatcgcttataataacctgggagatattaacaaagccatcgaataccatgaatatcatctaaaaatttccaaagaagtgcgagacatagttggagaagggcgtgcttatggtaatcttggcagcgcttatgtcgaactgggtgatttcaaaaaagccgtcgagtaccatgagcgtcatttaaaaattgccaaagaagtaggagacaaagctggcgaaggacgtgcttgtggtagtcttggcatcgcttataatagcctgggagatatcaacaaagccatcgagtaccatgaaaatcatctaaaaactaccaaagaagtacgagacatagctggagaaggacgatgcttatgtctaggagatttcaaaagagccattgagtaccatgaacgtaatctaaaaattgccaaagaggtaggagacaaagctggagaaggaggtacttatggcaatcttggcaacgcttatcacaggctgggagatttgaagaaagccatcgagtactatgaacgtcatctagaaattaccaaggaagtaggaaacaaagctgaagaaggacgagcttatagtaaatttggcaacgcttatcacagtctgggagatttcagcaaagccatcgagtatcatgagcgtgatctgaaaattgccaaagaagtaggggacagagctggagaaggacgtgcttttggtaatcttggttacgcttatagcaatttaggagatttcataaaagcgatcgagtaccttgaccgtgatctaaaaattaccaaagaggtaggagacaaagttggacaaggaactgcttatggtaaccttggcaacgcttattgcagtctgggagaattcagaaaagccatcgagtaccatgaacgtcgtctacaaattgcaaaagtagtaggagacaaagctggagaaggacgtgcttatggtgatcttggcaccgcttatcaccgtctaggagatttgaaaaaagccatcgagtaccataaacgaaatttaaaaatttccaaagaagtaggagacaaagctggagaaggaggtgcttatggtaatcttggccacgactatgacagtctgggaaatttcaaaaaagccatcgagcaccatgagcgtcatcttaaaatcgtcaaggacgtaggagacaaatctggagaaggaaaggcttatggtaatcttggcaaagcttatcacggaattgcggatttcaaaaaagccatcgagtaccatgaacatcatctaaaaattgccaaagaagtaggcgacagtgatggagaaggaagtgcttatggtaatcttggcaactcttatcacagtctgggaaatttcaaaaaagccatcgattaccatgaacttcgtcttaaaattgccaacgaattaggcgacattgctggagaaggaggtgctcatggtagtattggcatcgcttatggcaatctgggagatttcaagaaagcgatcgagtaccatgaacgttgccttaaagttgccaaagaaataggaaacaaatctggagaaggaggtgcttatggtaatcttggcaacgcttatggcaacttgggcgatttgaaaaaagccattgcgtgccatgaacgacatctaaaaattgcaaaagaagtgggagacacggttggggaaggaagtgcttatggtaatcttggcaacgcttatcacagtctgagagatttcaaaaaagcaattgactaccatgaacgttttttaaaaatcgccaaagaagtaggcgacagggctagagaggctaaatcattgtatttccttggtcagagctatgaatcagaaggttcaccacttgaggcccttgattgttattattccagtgtgagattattcaatgatgtcaggcgcgatctaatgtttaaagatgagtggaaagttagctaccgcaatttgaacagttatgcatacacctgtttatggcgtctactgctaaagcaaggcgaagtagtcgaggccctatttgccgctgagcaaggacgtgcacaagctctgcatgatcttatgaatataaaatatgcaactgaaacatctgataaagcggaagaaacaacttttaacacattagcgcgtctttcatctaatacagtctttatggcggttgatgaaaaagaaatcattttctggatcattcaagatggaaaagatattcagttgagaagaaaaaaaatttgcaacaacagctcggaagatgtggcgaccactgttgctgagtgtttaattcacgatgcttatgaagaaattggtgtgagaggtggtgtgacgtgcgaggatcgttcattggatcggatgggcgatgaagatctatcaggtacaaaatgtgatcaaaccatatctcaaccgacaccttttcataccaatcctttgaaatcattgtatgacctcatcattggccccatcttagacttgattcatggaaaagaactgatattagttcctgaaggagcattgtgcttggccccttatgctgcattccttgattccaattcaaactacctttgtcaagattttaccattcgaataattccatccctgagtagcttgaaattgatcacagattgttcagcagattaccacagtaagtctggggcattgctcgtgggtgatccgtgtttagaggaagttctttatcaggggacaaagctgatgcagttgccatgtgcaaaagcggaagtagagatagtcgggaaaatactccacgctgcacccctcaccggtaaagaggcaacaaaagatgaagtcttaagaagacttccgtcagttgctttggtacacattgcagcacatggtcgtatggaaacaggagaaattgctttggcaccaaacactacacgagcatcccagattccaattgaggaagacttccttttaacaatgaaggatgtgctgagcgttcaattgcgagcaagactggttgttctaagttgctgtcatagtggtcgtggcgagattaaggctgagggggtggttggcattgcacgggcctttctgggtgccggtgctcgttctgtacttgtgtctctgtgggcgattgatgacgaggccactctggagttcatgaaaagtttctatcatcatctcgcagaaggaaggagtgctaatgaagctctgaaccgagccatgaagtgtatgagagattctgacgagtttagcgaagtgaagtactgggcaccatttgtacttatcggtgatgacgttacactggagttagatgaaggcgattag

Transcript

evm.model.Ap8.1938

ATGGAGAATAATCGCTCTTTTCTGAGCGTATTTGGCGCAACAGCCATGGATCAAACTGAAGTCCCATCACCTTCTGTTGGACAACTTGATTTTGATGATGACACCTTACGAGCGATAGCAAAAGTGTACCTGGATGAAGGTGACAAAGAATATGGAAATAAAGAAGCTTTAAACGCCATATACTTCTACACTGAAGGACTTCAAGTGAACTGCAAGGATGACGAACTGAATGCCAAACTGTACTGCAACAGAGCAACTGCTAATTTTCATTTAGGCAATTACCAAGAAGCCCTTAAAGATGCAACAGCTGCTGTGAAGTTGGAACCGACTTCGATTGAAGCCATTGAAACAGGAGCAACTGTTTGTGTTCAGCTACAGTGTTATGAAGAAGCCATAACCTGGTGTGACATGGGATTGGCAATTGACAAGACTAGTAAGACATTAACAGATTTGTGGGCCTGGTGTATTAGTGATCAAAATAGTTCCCAAGAAATAAAACGACCAAACACGAAGAGTAGGCCAACCACTCAGACTGTAAAAAGCCTGAAAAGTGAAGTTCTTCCCAAGACCTTCAAAGACGTTCAAAAGGTAGGAGACACGGCTGGAAAAGGACGTACTTATGGTGATCTTGGTTACGCTTCTGGCAATCTGGGAGGTTTCAAACAAGCCATCGAGTACCTTGAACGTGATTTAAAAATTGCCAAAGAACTACGAGACAAAGCTGAAGAAGGTCGTGCTTATGGTAATCTTGCCATCGCTTATGGCAGTATGGGATATTTGGAAAAAGCTATCGAGTACAATGGGCGGCATCTTCAAATTGCTAAAGAAGTAGGCGATCATGCTGGAGAAAAACGTGCTTATGGCAATCTTATCAACGCTTATTACAGTCTGGGAGATTTCAAAAAAGCCATCGATTACCATGAAAGTTATCTAAAAACTTTCCAAGAAGTAGAAAACAAAGCCGGGGAAGCAAAAGCTTATAAAAAACTTGGCATCGCTTATCACAGTCTAGGAAAGTTCCAAAAAGCCATCGAATACCATGAACGTCACCTTGAAATCGCCAAAGAAGATAGGGATCAAGCTGAAGAAAGACATGCTTATAATAATCTTGGTTGCGTTTATGTCGATCTGGGTGATTTCAGAAAAGCCGTCGAGTACCTTGAACGTGGTCTAAAAATGGCCAAAGAAGTAGGAGACAAAGTTGACGAAGGAGGTGCTTGTGGTAATCTTGGCATCGCTTATAATAACCTGGGAGATATTAACAAAGCCATCGAATACCATGAATATCATCTAAAAATTTCCAAAGAAGTGCGAGACATAGTTGGAGAAGGGCGTGCTTATGGTAATCTTGGCAGCGCTTATGTCGAACTGGGTGATTTCAAAAAAGCCGTCGAGTACCATGAGCGTCATTTAAAAATTGCCAAAGAAGTAGGAGACAAAGCTGGCGAAGGACGTGCTTGTGGTAGTCTTGGCATCGCTTATAATAGCCTGGGAGATATCAACAAAGCCATCGAGTACCATGAAAATCATCTAAAAACTACCAAAGAAGTACGAGACATAGCTGGAGAAGGACGATGCTTATGTCTAGGAGATTTCAAAAGAGCCATTGAGTACCATGAACGTAATCTAAAAATTGCCAAAGAGGTAGGAGACAAAGCTGGAGAAGGAGGTACTTATGGCAATCTTGGCAACGCTTATCACAGGCTGGGAGATTTGAAGAAAGCCATCGAGTACTATGAACGTCATCTAGAAATTACCAAGGAAGTAGGAAACAAAGCTGAAGAAGGACGAGCTTATAGTAAATTTGGCAACGCTTATCACAGTCTGGGAGATTTCAGCAAAGCCATCGAGTATCATGAGCGTGATCTGAAAATTGCCAAAGAAGTAGGGGACAGAGCTGGAGAAGGACGTGCTTTTGGTAATCTTGGTTACGCTTATAGCAATTTAGGAGATTTCATAAAAGCGATCGAGTACCTTGACCGTGATCTAAAAATTACCAAAGAGGTAGGAGACAAAGTTGGACAAGGAACTGCTTATGGTAACCTTGGCAACGCTTATTGCAGTCTGGGAGAATTCAGAAAAGCCATCGAGTACCATGAACGTCGTCTACAAATTGCAAAAGTAGTAGGAGACAAAGCTGGAGAAGGACGTGCTTATGGTGATCTTGGCACCGCTTATCACCGTCTAGGAGATTTGAAAAAAGCCATCGAGTACCATAAACGAAATTTAAAAATTTCCAAAGAAGTAGGAGACAAAGCTGGAGAAGGAGGTGCTTATGGTAATCTTGGCCACGACTATGACAGTCTGGGAAATTTCAAAAAAGCCATCGAGCACCATGAGCGTCATCTTAAAATCGTCAAGGACGTAGGAGACAAATCTGGAGAAGGAAAGGCTTATGGTAATCTTGGCAAAGCTTATCACGGAATTGCGGATTTCAAAAAAGCCATCGAGTACCATGAACATCATCTAAAAATTGCCAAAGAAGTAGGCGACAGTGATGGAGAAGGAAGTGCTTATGGTAATCTTGGCAACTCTTATCACAGTCTGGGAAATTTCAAAAAAGCCATCGATTACCATGAACTTCGTCTTAAAATTGCCAACGAATTAGGCGACATTGCTGGAGAAGGAGGTGCTCATGGTAGTATTGGCATCGCTTATGGCAATCTGGGAGATTTCAAGAAAGCGATCGAGTACCATGAACGTTGCCTTAAAGTTGCCAAAGAAATAGGAAACAAATCTGGAGAAGGAGGTGCTTATGGTAATCTTGGCAACGCTTATGGCAACTTGGGCGATTTGAAAAAAGCCATTGCGTGCCATGAACGACATCTAAAAATTGCAAAAGAAGTGGGAGACACGGTTGGGGAAGGAAGTGCTTATGGTAATCTTGGCAACGCTTATCACAGTCTGAGAGATTTCAAAAAAGCAATTGACTACCATGAACGTTTTTTAAAAATCGCCAAAGAAGTAGGCGACAGGGCTAGAGAGGCTAAATCATTGTATTTCCTTGGTCAGAGCTATGAATCAGAAGGTTCACCACTTGAGGCCCTTGATTGTTATTATTCCAGTGTGAGATTATTCAATGATGTCAGGCGCGATCTAATGTTTAAAGATGAGTGGAAAGTTAGCTACCGCAATTTGAACAGTTATGCATACACCTGTTTATGGCGTCTACTGCTAAAGCAAGGCGAAGTAGTCGAGGCCCTATTTGCCGCTGAGCAAGGACGTGCACAAGCTCTGCATGATCTTATGAATATAAAATATGCAACTGAAACATCTGATAAAGCGGAAGAAACAACTTTTAACACATTAGCGCGTCTTTCATCTAATACAGTCTTTATGGCGGTTGATGAAAAAGAAATCATTTTCTGGATCATTCAAGATGGAAAAGATATTCAGTTGAGAAGAAAAAAAATTTGCAACAACAGCTCGGAAGATGTGGCGACCACTGTTGCTGAGTGTTTAATTCACGATGCTTATGAAGAAATTGGTGTGAGAGGTGGTGTGACGTGCGAGGATCGTTCATTGGATCGGATGGGCGATGAAGATCTATCAGGTACAAAATGTGATCAAACCATATCTCAACCGACACCTTTTCATACCAATCCTTTGAAATCATTGTATGACCTCATCATTGGCCCCATCTTAGACTTGATTCATGGAAAAGAACTGATATTAGTTCCTGAAGGAGCATTGTGCTTGGCCCCTTATGCTGCATTCCTTGATTCCAATTCAAACTACCTTTGTCAAGATTTTACCATTCGAATAATTCCATCCCTGAGTAGCTTGAAATTGATCACAGATTGTTCAGCAGATTACCACAGTAAGTCTGGGGCATTGCTCGTGGGTGATCCGTGTTTAGAGGAAGTTCTTTATCAGGGGACAAAGCTGATGCAGTTGCCATGTGCAAAAGCGGAAGTAGAGATAGTCGGGAAAATACTCCACGCTGCACCCCTCACCGGTAAAGAGGCAACAAAAGATGAAGTCTTAAGAAGACTTCCGTCAGTTGCTTTGGTACACATTGCAGCACATGGTCGTATGGAAACAGGAGAAATTGCTTTGGCACCAAACACTACACGAGCATCCCAGATTCCAATTGAGGAAGACTTCCTTTTAACAATGAAGGATGTGCTGAGCGTTCAATTGCGAGCAAGACTGGTTGTTCTAAGTTGCTGTCATAGTGGTCGTGGCGAGATTAAGGCTGAGGGGGTGGTTGGCATTGCACGGGCCTTTCTGGGTGCCGGTGCTCGTTCTGTACTTGTGTCTCTGTGGGCGATTGATGACGAGGCCACTCTGGAGTTCATGAAAAGTTTCTATCATCATCTCGCAGAAGGAAGGAGTGCTAATGAAGCTCTGAACCGAGCCATGAAGTGTATGAGAGATTCTGACGAGTTTAGCGAAGTGAAGTACTGGGCACCATTTGTACTTATCGGTGATGACGTTACACTGGAGTTAGATGAAGGCGATTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3ZBZ8	Stress-induced-phosphoprotein 1 OS=Bos taurus OX=9913 GN=STIP1 PE=2 SV=1
O54981	Stress-induced-phosphoprotein 1 OS=Cricetulus griseus OX=10029 GN=STIP1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000014 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07719 all species →	TPR_2	Tetratricopeptide repeat	Repeat	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF12770 all species →	CHAT	CHAT domain	Domain	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013105 all species →	Repeat	Tetratricopeptide repeat 2	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR024983 all species →	Domain	CHAT domain	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR052699 all species →	Family	Regulatory & Mitotic Spindle Associated	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10098 all species →	RAPSYN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap8.1938.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.