Genomic Location: Ap8:21577355...21590935
NR annotation: XP_020621521.1, protein capicua homolog isoform X2 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap8.1955 |
| Transcript |
| evm.model.Ap8.1955 |
| Protein |
| evm.model.Ap8.1955 |
| UniProt accession | Description |
|---|---|
| Q924A2 | Protein capicua homolog OS=Mus musculus OX=10090 GN=Cic PE=1 SV=2 |
| Q96RK0 | Protein capicua homolog OS=Homo sapiens OX=9606 GN=CIC PE=1 SV=3 |
| Q9U1H0 | Putative transcription factor capicua OS=Drosophila melanogaster OX=7227 GN=cic PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003655 (this species only) |
| Transcription factor family | HMG · all TF in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00505 all species → | HMG_box | HMG (high mobility group) box | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR009071 all species → | Domain | High mobility group box domain | Interproscan |
| IPR036910 all species → | Homologous_superfamily | High mobility group box domain superfamily | Interproscan |
| IPR052412 all species → | Family | Cell Cycle and Developmental Transcription Regulators | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13059 all species → | HMG-BOX TRANSCRIPTION FACTOR BBX | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000977 all species → | Molecular Function | RNA polymerase II transcription regulatory region sequence-specific DNA binding | Interproscan |
| GO:0000981 all species → | Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
evm.model.Ap8.1955.Transcript abundance of evm.model.Ap8.1955 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
