Gene detail

Detailed information of evm.model.Ap8.1958 in Astrangia poculata

Genomic Location: Ap8:21645183...21679721
NR annotation: XP_020621594.1, peripheral plasma membrane protein CASK-like isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.1958

atggagaacggttttccagctcgcttcgacttgcaggaacaaatcggaaaaggtacttttagtgtcattcgaagatgtttcgacaagaaaagcgatcgagtgtgcgccgtgaaaatcgtggatatttccaagatgtcctcttctagtggtcttacagaggaagatttacaaagggaggcccgcatttgccagaagttacggcatccccatattgttgaaattattggtgcttactcaatggatggctttatttacatggtgtttgagtacatggatggtgctgatttgtgttttgaaatagtgaatcgtgttcatgctggctttgtttacagcgaagctgttgcgagtcactacctcagacaagttctggaagctgtgtctttttgtcatgaaaatgaaattgtacatcgtgatctcaagcctcacaacattctattatcaagtaaagagaattcagcaccaatcaagattgctgactttggtgtcgcagtagaaattggggaagaaggctatgtcacaagtggtcgcataggaaccccacattttatgtctcccgaggtcataaacagggaacaatatggaaaacctgtagatgtttggggatgtggtgtaattctctttattcttctgagtggatctttccccttccatggcacaggagaaaaaatctatgagtccatcaagaaagggatccctacgatgagagccaaaatttgggacaacatatctgatgaggcaaaagatttagtgaaaaaaatgttggcacatgatcagaatgacagactgacagcaaaagaagcactgcagcatccatggcttagtaatcgcaatgttcctcagagaatgcacctccaagatacagttgatgaaatgaagaagttcaatgcaagaagaaaactaaagggtgctatcttagctgctgtggccagcagaaaatttccaatggccaatggagacgttattggatctcaggacgatgtctttgagtacgaggatgacgacctctcggcatcaggggctattggccagcttcttgactcattagaagagattcaagttcttacaggagcaaaagacgaggatgtgaactttttacaaaactttttcgaacatcagacactccaagctttactagaggtctatgatagaagtcaggaatggaccgacgaaaaccggacatgtccttcgacgtcttctccgagcgctgtgcaagacgcgaaagaggttattgacctggtcgagttcagggcagaagacgacgacgattgttacgagttgcaaaatatcttgtcggacccccacgtcatggcaatgctggagtcgcacgatgaggtattgaagaataccaccacaggtgaagaagtcaacccgtaccctcccgaaaacacaactgcgtttagcagcagattggacgactctgtaggagatcgaccggaaaaactcacgcgtgttcgactagttcagttccacaaaaatcccaacgaacctatgggtatcactctaaagctgaatgaagaagggaggtgtattgtggcgcggatcatgcatggaggaatgattcacagacaaggcacactacatcccggggacgaaatacgagagataaatggagtaaacgtggccgacaaatcagttgaaaatcttcaagctattttgcgcgatgctagtggaaatgtgacgtttaaaatcgtaccaagctcaagaaatatcactcaagcttctgaggtgttcgtgcgggcgctgtttgattatgatccccggggggatgacctaattccgtgccaacaggcggggttatccttcaaatgtggggatattatccaagttgtgagcaaagctgacccttactggtggcaggccatgaaagcggacgataaagacggatttgctggactcgctccctcgcccgagctacaggaatggcgagtttcatgtttagctgcggaaaaagccaggaaacagaatgcaacttgcatctggttcaacaagaaaaagaagagcggtcgggataagtacgtcgctaagcataatgcagtatttgaccagcttgatctcgttacttacgaagaagttgtaaagttggattacttcaaacgaaagacgcttgttcttcttggtgcccatggtgtcggaagaagacatattaaaaacacgcttataaataaatatcccgagagattctcttacccaattcctcacacaacacgagagccgaaggaaggagaagaggacggcaaaaattacttcttcgtctctgccgaggacatgttattggacattgaggctaacaagtatctggagtatggaactcaccagggcgccatgtatggaaccaaactcgacacgataagagacaacctcaaccagggcctcacggctatactcgacgtggaacctcaggcattgaaggttcttcggacggcagaattctctccttacgttgtgttcatctcggcgccgactatcgttggaagcgaaagcatgaagagcccgtccacaccaaatggagacgttgctgacgaaagtcttcagaggctggccaaggactcggactcgcttcgccagacctacggacacttgttcgacttgacaattgtcaacaacgatatcgacgacaccattcgcttgctggagaacgcgctcgaacatctccgcacgaccccacagtgggtacccgtgtcatgggtgtactaa

Transcript

evm.model.Ap8.1958

ATGGAGAACGGTTTTCCAGCTCGCTTCGACTTGCAGGAACAAATCGGAAAAGGTACTTTTAGTGTCATTCGAAGATGTTTCGACAAGAAAAGCGATCGAGTGTGCGCCGTGAAAATCGTGGATATTTCCAAGATGTCCTCTTCTAGTGGTCTTACAGAGGAAGATTTACAAAGGGAGGCCCGCATTTGCCAGAAGTTACGGCATCCCCATATTGTTGAAATTATTGGTGCTTACTCAATGGATGGCTTTATTTACATGGTGTTTGAGTACATGGATGGTGCTGATTTGTGTTTTGAAATAGTGAATCGTGTTCATGCTGGCTTTGTTTACAGCGAAGCTGTTGCGAGTCACTACCTCAGACAAGTTCTGGAAGCTGTGTCTTTTTGTCATGAAAATGAAATTGTACATCGTGATCTCAAGCCTCACAACATTCTATTATCAAGTAAAGAGAATTCAGCACCAATCAAGATTGCTGACTTTGGTGTCGCAGTAGAAATTGGGGAAGAAGGCTATGTCACAAGTGGTCGCATAGGAACCCCACATTTTATGTCTCCCGAGGTCATAAACAGGGAACAATATGGAAAACCTGTAGATGTTTGGGGATGTGGTGTAATTCTCTTTATTCTTCTGAGTGGATCTTTCCCCTTCCATGGCACAGGAGAAAAAATCTATGAGTCCATCAAGAAAGGGATCCCTACGATGAGAGCCAAAATTTGGGACAACATATCTGATGAGGCAAAAGATTTAGTGAAAAAAATGTTGGCACATGATCAGAATGACAGACTGACAGCAAAAGAAGCACTGCAGCATCCATGGCTTAGTAATCGCAATGTTCCTCAGAGAATGCACCTCCAAGATACAGTTGATGAAATGAAGAAGTTCAATGCAAGAAGAAAACTAAAGGGTGCTATCTTAGCTGCTGTGGCCAGCAGAAAATTTCCAATGGCCAATGGAGACGTTATTGGATCTCAGGACGATGTCTTTGAGTACGAGGATGACGACCTCTCGGCATCAGGGGCTATTGGCCAGCTTCTTGACTCATTAGAAGAGATTCAAGTTCTTACAGGAGCAAAAGACGAGGATGTGAACTTTTTACAAAACTTTTTCGAACATCAGACACTCCAAGCTTTACTAGAGGTCTATGATAGAAGTCAGGAATGGACCGACGAAAACCGGACATGTCCTTCGACGTCTTCTCCGAGCGCTGTGCAAGACGCGAAAGAGGTTATTGACCTGGTCGAGTTCAGGGCAGAAGACGACGACGATTGTTACGAGTTGCAAAATATCTTGTCGGACCCCCACGTCATGGCAATGCTGGAGTCGCACGATGAGGTATTGAAGAATACCACCACAGGTGAAGAAGTCAACCCGTACCCTCCCGAAAACACAACTGCGTTTAGCAGCAGATTGGACGACTCTGTAGGAGATCGACCGGAAAAACTCACGCGTGTTCGACTAGTTCAGTTCCACAAAAATCCCAACGAACCTATGGGTATCACTCTAAAGCTGAATGAAGAAGGGAGGTGTATTGTGGCGCGGATCATGCATGGAGGAATGATTCACAGACAAGGCACACTACATCCCGGGGACGAAATACGAGAGATAAATGGAGTAAACGTGGCCGACAAATCAGTTGAAAATCTTCAAGCTATTTTGCGCGATGCTAGTGGAAATGTGACGTTTAAAATCGTACCAAGCTCAAGAAATATCACTCAAGCTTCTGAGGTGTTCGTGCGGGCGCTGTTTGATTATGATCCCCGGGGGGATGACCTAATTCCGTGCCAACAGGCGGGGTTATCCTTCAAATGTGGGGATATTATCCAAGTTGTGAGCAAAGCTGACCCTTACTGGTGGCAGGCCATGAAAGCGGACGATAAAGACGGATTTGCTGGACTCGCTCCCTCGCCCGAGCTACAGGAATGGCGAGTTTCATGTTTAGCTGCGGAAAAAGCCAGGAAACAGAATGCAACTTGCATCTGGTTCAACAAGAAAAAGAAGAGCGGTCGGGATAAGTACGTCGCTAAGCATAATGCAGTATTTGACCAGCTTGATCTCGTTACTTACGAAGAAGTTGTAAAGTTGGATTACTTCAAACGAAAGACGCTTGTTCTTCTTGGTGCCCATGGTGTCGGAAGAAGACATATTAAAAACACGCTTATAAATAAATATCCCGAGAGATTCTCTTACCCAATTCCTCACACAACACGAGAGCCGAAGGAAGGAGAAGAGGACGGCAAAAATTACTTCTTCGTCTCTGCCGAGGACATGTTATTGGACATTGAGGCTAACAAGTATCTGGAGTATGGAACTCACCAGGGCGCCATGTATGGAACCAAACTCGACACGATAAGAGACAACCTCAACCAGGGCCTCACGGCTATACTCGACGTGGAACCTCAGGCATTGAAGGTTCTTCGGACGGCAGAATTCTCTCCTTACGTTGTGTTCATCTCGGCGCCGACTATCGTTGGAAGCGAAAGCATGAAGAGCCCGTCCACACCAAATGGAGACGTTGCTGACGAAAGTCTTCAGAGGCTGGCCAAGGACTCGGACTCGCTTCGCCAGACCTACGGACACTTGTTCGACTTGACAATTGTCAACAACGATATCGACGACACCATTCGCTTGCTGGAGAACGCGCTCGAACATCTCCGCACGACCCCACAGTGGGTACCCGTGTCATGGGTGTACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O14936	Peripheral plasma membrane protein CASK OS=Homo sapiens OX=9606 GN=CASK PE=1 SV=3
O70589	Peripheral plasma membrane protein CASK OS=Mus musculus OX=10090 GN=Cask PE=1 SV=2
Q62915	Peripheral plasma membrane protein CASK OS=Rattus norvegicus OX=10116 GN=Cask PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000787 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00625 all species →	Guanylate_kin	Guanylate kinase	Domain	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF02828 all species →	L27	L27 domain	Domain	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR008145 all species →	Domain	Guanylate kinase/L-type calcium channel beta subunit	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR004172 all species →	Domain	L27 domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036892 all species →	Homologous_superfamily	L27 domain superfamily	Interproscan
IPR014775 all species →	Domain	L27 domain, C-terminal	Interproscan
IPR020590 all species →	Conserved_site	Guanylate kinase, conserved site	Interproscan
IPR008144 all species →	Domain	Guanylate kinase-like domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR050716 all species →	Family	Membrane-associated guanylate kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23122 all species →	MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005102 all species →	Molecular Function	signaling receptor binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005911 all species →	Cellular Component	cell-cell junction	Interproscan
GO:0034613 all species →	Biological Process	protein localization	Interproscan
GO:0046928 all species →	Biological Process	regulation of neurotransmitter secretion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06103	CASK; calcium/calmodulin-dependent serine protein kinase	EC:2.7.11.1	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.