Detailed information of evm.model.Ap8.2005 in Astrangia poculata

Genomic Location: Ap8:22204147...22204816
NR annotation: KAJ7321743.1, hypothetical protein OS493_034130 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9PVY0Retinal homeobox protein Rx1 OS=Gallus gallus OX=9031 GN=RX1 PE=2 SV=1
P58304Visual system homeobox 2 OS=Homo sapiens OX=9606 GN=VSX2 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000383 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03826
all species →		OAROAR motifMotifInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050649
all species →		FamilyPaired Homeobox Transcription FactorsInterproscan
IPR001356
all species →		DomainHomeobox domainInterproscan
IPR003654
all species →		DomainOAR domainInterproscan
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24329
all species →		HOMEOBOX PROTEIN ARISTALESSInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000977
all species →		Molecular FunctionRNA polymerase II transcription regulatory region sequence-specific DNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap8.2005.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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